Carina I Holmberg

Dr. Carina I Holmberg

orcid

Research Focus & Metrics

Academic Career Length

29Years (1998-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 December 2002 in Trends in Biochemical Sciences
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Journal Article
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CHCarina I Holmberg
Carina I Holmberg
STStefanie E.F Tran
Stefanie E.F Tran
JEJohn E Eriksson
John E Eriksson
LSLea Sistonen
Lea Sistonen

1 April 2003 in Molecular and Cellular Biology
Verified
Journal Article
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VHVille Hietakangas
Ville Hietakangas
JAJohanna K. Ahlskog
Johanna K. Ahlskog
AJAnnika M. Jakobsson
Annika M. Jakobsson
MHMaria Hellesuo
Maria Hellesuo
NSNiko M. Sahlberg
Niko M. Sahlberg
LSLea Sistonen
Lea Sistonen
The heat shock response, which is accompanied by a rapid and robust upregulation of heat shock proteins (Hsps), is a highly conserved protection mechanism against protein-damaging stress. Hsp induction is mainly regulated at transcriptional level by stress-inducible heat shock factor 1 (HSF1). Upon activation, HSF1 trimerizes, binds to DNA, concentrates in the nuclear stress granules, and undergoes a marked multisite phosphorylation, which correlates with its transcriptional activity. In this study, we show that HSF1 is modified by SUMO-1 and SUMO-2 in a stress-inducible manner. Sumoylation is rapidly and transiently enhanced on lysine 298, located in the regulatory domain of HSF1, adjacent to several critical phosphorylation sites. Sumoylation analyses of HSF1 phosphorylation site mutants reveal that specifically the phosphorylation-deficient S303 mutant remains devoid of SUMO modification in vivo and the mutant mimicking phosphorylation of S303 promotes HSF1 sumoylation in vitro, indicating that S303 phosphorylation is required for K298 sumoylation. This finding is further supported by phosphopeptide mapping and analysis with S303/7 phosphospecific antibodies, which demonstrate that serine 303 is a target for strong heat-inducible phosphorylation, corresponding to the inducible HSF1 sumoylation. A transient phosphorylation-dependent colocalization of HSF1 and SUMO-1 in nuclear stress granules provides evidence for a strictly regulated subnuclear interplay between HSF1 and SUMO.

7 October 2004 in The EMBO Journal
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Journal Article
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CHCarina I Holmberg
Carina I Holmberg
KSKristine E Staniszewski
Kristine E Staniszewski
KMKwame N Mensah
Kwame N Mensah
AMAndreas Matouschek
Andreas Matouschek
RMRichard I Morimoto
Richard I Morimoto
Accumulation of mutant proteins into misfolded species and aggregates is characteristic for diverse neurodegenerative diseases including the polyglutamine diseases. While several studies have suggested that polyglutamine protein aggregates impair the ubiquitin–proteasome system, the molecular mechanisms underlying the interaction between polyglutamine proteins and the proteasome have remained elusive. In this study, we use fluorescence live‐cell imaging to demonstrate that the proteasome is sequestered irreversibly within aggregates of overexpressed N‐terminal mutant Huntingtin fragment or simple polyglutamine expansion proteins. Moreover, by direct targeting of polyglutamine proteins for proteasomal degradation, we observe incomplete degradation of these substrates both in vitro and in vivo . Thus, our data reveal that intrinsic properties of the polyglutamine proteins prevent their efficient degradation and clearance. Additionally, fluorescence resonance energy transfer is detected between the proteasome and aggregated polyglutamine proteins indicative of a close and stable interaction. We propose that polyglutamine‐containing proteins are kinetically trapped within proteasomes, which could explain their deleterious effects on cellular function over time.

9 June 2011 in PLOS Genetics
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Journal Article
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XLXuan Li
Xuan Li
OMOlli Matilainen
Olli Matilainen
CJCongyu Jin
Congyu Jin
KGKira M Glover-Cutter
Kira M Glover-Cutter
CHCarina I Holmberg
Carina I Holmberg
TBT Keith Blackwell
T Keith Blackwell
SKN-1, the Caenorhabditis elegans Nrf1/2/3 ortholog, promotes both oxidative stress resistance and longevity. SKN-1 responds to oxidative stress by upregulating genes that detoxify and defend against free radicals and other reactive molecules, a SKN-1/Nrf function that is both well-known and conserved. Here we show that SKN-1 has a broader and more complex role in maintaining cellular stress defenses. SKN-1 sustains expression and activity of the ubiquitin-proteasome system (UPS) and coordinates specific protective responses to perturbations in protein synthesis or degradation through the UPS. If translation initiation or elongation is impaired, SKN-1 upregulates overlapping sets of cytoprotective genes and increases stress resistance. When proteasome gene expression and activity are blocked, SKN-1 activates multiple classes of proteasome subunit genes in a compensatory response. SKN-1 thereby maintains UPS activity in the intestine in vivo under normal conditions and promotes survival when the proteasome is inhibited. In contrast, when translation elongation is impaired, SKN-1 does not upregulate proteasome genes, and UPS activity is then reduced. This indicates that UPS activity depends upon presence of an intact translation elongation apparatus; and it supports a model, suggested by genetic and biochemical studies in yeast, that protein synthesis and degradation may be coupled processes. SKN-1 therefore has a critical tissue-specific function in increasing proteasome gene expression and UPS activity under normal conditions, as well as when the UPS system is stressed, but mounts distinct responses when protein synthesis is perturbed. The specificity of these SKN-1–mediated stress responses, along with the apparent coordination between UPS and translation elongation activity, may promote protein homeostasis under stress or disease conditions. The data suggest that SKN-1 may increase longevity, not only through its well-documented role in boosting stress resistance, but also through contributing to protein homeostasis. The mechanisms through which organisms defend against environmental stresses are critical during diverse disease processes and are likely to be important for longevity. The nematode C. elegans is advantageous for genetic analysis of how stress defenses function and contribute to survival. The evolutionarily conserved C. elegans protein SKN-1 promotes stress resistance and longevity, and it defends against toxic small molecules. We now report that in certain tissues SKN-1 also maintains production of the proteasome, a structure that degrades proteins in a regulated fashion. SKN-1 mounts distinct stress responses to perturbations in protein synthesis and degradation, in which it boosts proteasome levels only in response to proteasome impairment. Remarkably, proteasome activity also depends upon the proper functioning of the protein synthesis apparatus. The specificity of SKN-1 stress responses may be important for protein homeostasis, allowing SKN-1 to maintain levels and activity of the proteasomal degradation apparatus, but not increase degradation when protein synthesis is impaired. This role of SKN-1 in regulating protein turnover may be important for many of its stress defense functions and for protection against disease and aging.

10 October 2005 in Journal of Cell Biology
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GMGen Matsumoto
Gen Matsumoto
ASAleksandar Stojanovic
Aleksandar Stojanovic
CHCarina I Holmberg
Carina I Holmberg
SKSoojin Kim
Soojin Kim
RMRichard I. Morimoto
Richard I. Morimoto
The appearance of protein aggregates is a characteristic of protein misfolding disorders including familial amyotrophic lateral sclerosis, a neurodegenerative disease caused by inherited mutations in Cu/Zn superoxide dismutase 1 (SOD1). Here, we use live cell imaging of neuronal and nonneuronal cells to show that SOD1 mutants (G85R and G93A) form an aggregate structure consisting of immobile scaffolds, through which noninteracting cellular proteins can diffuse. Hsp70 transiently interacts, in a chaperone activity-dependent manner, with these mutant SOD1 aggregate structures. In contrast, the proteasome is sequestered within the aggregate structure, an event associated with decreased degradation of a proteasomal substrate. Through the use of time-lapse microscopy of individual cells, we show that nearly all (90%) aggregate-containing cells express higher levels of mutant SOD1 and died within 48 h, whereas 70% of cells expressing a soluble mutant SOD1 survived. Our results demonstrate that SOD1 G85R and G93A mutants form a distinct class of aggregate structures in cells destined for neuronal cell death.

1 September 2009 in Journal of Cellular and Molecular Medicine
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Journal Article
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TRTuomas Ryhänen
Tuomas Ryhänen
JHJuha Hyttinen
Juha Hyttinen
JKJürgen Kopitz
Jürgen Kopitz
KRKirsi Rilla
Kirsi Rilla
EKErkki Kuusisto
Erkki Kuusisto
Kai KaarnirantaKai Kaarniranta
Kai Kaarniranta
The pathogenesis of age‐related macular degeneration involves chronic oxidative stress, impaired degradation of membranous discs shed from photoreceptor outer segments and accumulation of lysosomal lipofuscin in retinal pigment epithelial (RPE) cells. It has been estimated that a major part of cellular proteolysis occurs in proteasomes, but the importance of proteasomes and the other proteolytic pathways including autophagy in RPE cells is poorly understood. Prior to proteolysis, heat shock proteins (Hsps), agents that function as molecular chaperones, attempt to refold misfolded proteins and thus prevent the accumulation of cytoplasmic protein aggregates. In the present study, the roles of the Hsp70 molecular chaperone and proteasomal and lysosomal proteolytic pathways were evaluated in human RPE cells (ARPE‐19). The Hsp70 and ubiquitin protein levels and localization were analysed by Western blotting and immunofluorescense. Confocal and transmission electron microscopy were used to detect cellular organelles and to evaluate the morphological changes. Hsp70 levels were modulated using RNA interference and overexpression techniques. Cell viability was measured by colorimetric assay. The proteasome inhibitor MG‐132 evoked the accumulation of perinuclear aggregates positive for Hsp70, ubiquitin‐protein conjugates and the lysosomal membrane protein LAMP‐2. Interestingly, the hsp70 mRNA depletion significantly increased cell death in conjunction with proteasome inhibition. We found that the accumulation of lysosomes was reversible: a cessation of proteasome inhibition led to clearance of the deposits via a mechanism believed to include autophagy. The molecular chaperone Hsp70, proteasomes and autophagy have an important regulatory role in the protein turnover of human RPE cells and may thus open new avenues for understanding degenerative processes in retinal cells.