Takashi Kobayashi

Dr. Takashi Kobayashi

Kobe University
orcid

Research Focus & Metrics

Academic Career Length

26Years (2001-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 July 2012 in PLOS ONE
Verified
Journal Article
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SNShin Nishiumi
Shin Nishiumi
TKTakashi Kobayashi
Takashi Kobayashi
AIAtsuki Ikeda
Atsuki Ikeda
TYTomoo Yoshie
Tomoo Yoshie
MKMegumi Kibi
Megumi Kibi
MYMasaru Yoshida
Masaru Yoshida
To improve the quality of life of colorectal cancer patients, it is important to establish new screening methods for early diagnosis of colorectal cancer. We performed serum metabolome analysis using gas-chromatography/mass-spectrometry (GC/MS). First, the accuracy of our GC/MS-based serum metabolomic analytical method was evaluated by calculating the RSD% values of serum levels of various metabolites. Second, the intra-day (morning, daytime, and night) and inter-day (among 3 days) variances of serum metabolite levels were examined. Then, serum metabolite levels were compared between colorectal cancer patients (N = 60; N = 12 for each stage from 0 to 4) and age- and sex-matched healthy volunteers (N = 60) as a training set. The metabolites whose levels displayed significant changes were subjected to multiple logistic regression analysis using the stepwise variable selection method, and a colorectal cancer prediction model was established. The prediction model was composed of 2-hydroxybutyrate, aspartic acid, kynurenine, and cystamine, and its AUC, sensitivity, specificity, and accuracy were 0.9097, 85.0%, 85.0%, and 85.0%, respectively, according to the training set data. In contrast, the sensitivity, specificity, and accuracy of CEA were 35.0%, 96.7%, and 65.8%, respectively, and those of CA19-9 were 16.7%, 100%, and 58.3%, respectively. The validity of the prediction model was confirmed using colorectal cancer patients (N = 59) and healthy volunteers (N = 63) as a validation set. At the validation set, the sensitivity, specificity, and accuracy of the prediction model were 83.1%, 81.0%, and 82.0%, respectively, and these values were almost the same as those obtained with the training set. In addition, the model displayed high sensitivity for detecting stage 0–2 colorectal cancer (82.8%). Our prediction model established via GC/MS-based serum metabolomic analysis is valuable for early detection of colorectal cancer and has the potential to become a novel screening test for colorectal cancer.

1 April 2013 in Cancer Epidemiology, Biomarkers & Prevention
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Journal Article
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TKTakashi Kobayashi
Takashi Kobayashi
SNShin Nishiumi
Shin Nishiumi
AIAtsuki Ikeda
Atsuki Ikeda
TYTomoo Yoshie
Tomoo Yoshie
ASAya Sakai
Aya Sakai
MYMasaru Yoshida
Masaru Yoshida
Background: To improve the prognosis of patients with pancreatic cancer, more accurate serum diagnostic methods are required. We used serum metabolomics as a diagnostic method for pancreatic cancer. Methods: Sera from patients with pancreatic cancer, healthy volunteers, and chronic pancreatitis were collected at multiple institutions. The pancreatic cancer and healthy volunteers were randomly allocated to the training or the validation set. All of the chronic pancreatitis cases were included in the validation set. In each study, the subjects' serum metabolites were analyzed by gas chromatography mass spectrometry (GC/MS) and a data processing system using an in-house library. The diagnostic model constructed via multiple logistic regression analysis in the training set study was evaluated on the basis of its sensitivity and specificity, and the results were confirmed by the validation set study. Results: In the training set study, which included 43 patients with pancreatic cancer and 42 healthy volunteers, the model possessed high sensitivity (86.0%) and specificity (88.1%) for pancreatic cancer. The use of the model was confirmed in the validation set study, which included 42 pancreatic cancer, 41 healthy volunteers, and 23 chronic pancreatitis; that is, it displayed high sensitivity (71.4%) and specificity (78.1%); and furthermore, it displayed higher sensitivity (77.8%) in resectable pancreatic cancer and lower false-positive rate (17.4%) in chronic pancreatitis than conventional markers. Conclusions: Our model possessed higher accuracy than conventional tumor markers at detecting the resectable patients with pancreatic cancer in cohort including patients with chronic pancreatitis. Impact: It is a promising method for improving the prognosis of pancreatic cancer via its early detection and accurate discrimination from chronic pancreatitis. Cancer Epidemiol Biomarkers Prev; 22(4); 571–9. ©2013 AACR.

1 November 2018 in Gastroenterology
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Journal Article
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RKRyoko Katagiri
Ryoko Katagiri
AGAtsushi Goto
Atsushi Goto
TNTakashi Nakagawa
Takashi Nakagawa
SNShin Nishiumi
Shin Nishiumi
TKTakashi Kobayashi
Takashi Kobayashi
STShoichiro Tsugane
Shoichiro Tsugane

4 February 2017 in Oncotarget
Verified
Journal Article
Open access
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SNShin Nishiumi
Shin Nishiumi
TKTakashi Kobayashi
Takashi Kobayashi
SKShuichi Kawana
Shuichi Kawana
YUYumi Unno
Yumi Unno
TSTakero Sakai
Takero Sakai
MYMasaru Yoshida
Masaru Yoshida
Investigations in the possibility of early detection of colorectal cancer by gas chromatography/triple-quadrupole mass spectrometry

1 June 2017 in Archives of Biochemistry and Biophysics
Verified
Journal Article
Closed access
SNSaut Horas H Nababan
Saut Horas H Nababan
SNShin Nishiumi
Shin Nishiumi
YKYuki Kawano
Yuki Kawano
TKTakashi Kobayashi
Takashi Kobayashi
MYMasaru Yoshida
Masaru Yoshida
TATakeshi Azuma
Takeshi Azuma

1 May 2018 in Journal of Bioscience and Bioengineering
Verified
Journal Article
Open access
SNShin Nishiumi
Shin Nishiumi
MSMakoto Suzuki
Makoto Suzuki
TKTakashi Kobayashi
Takashi Kobayashi
MYMasaru Yoshida
Masaru Yoshida
Recently, the use of metabolomic analysis of human serum and plasma for biomarker discovery and disease diagnosis in clinical studies has been increasing. The feasibility of using a metabolite biomarker for disease diagnosis is strongly dependent on the metabolite's stability during pre-analytical blood processing procedures, such as serum or plasma sampling and sample storage prior to centrifugation. However, the influence of blood processing procedures on the stability of metabolites has not been fully characterized. In the present study, we compared the levels of metabolites in matched human serum and plasma samples using gas chromatography coupled with mass spectrometry and liquid chromatography coupled with mass spectrometry. In addition, we evaluated the changes in plasma metabolite levels induced by storage at room temperature or at a cold temperature prior to centrifugation. As a result, it was found that 76 metabolites exhibited significant differences between their serum and plasma levels. Furthermore, the pre-centrifugation storage conditions significantly affected the plasma levels of 45 metabolites. These results highlight the importance of blood processing procedures during metabolome analysis, which should be considered during biomarker discovery and the subsequent use of biomarkers for disease diagnosis.