The recent characterization of the prokaryotic Cys ₂ His ₂ zinc-finger domain, identified in Ros protein from Agrobacterium tumefaciens , has demonstrated that, although possessing a similar zinc coordination sphere, this domain is structurally very different from its eukaryotic counterpart. A search in the databases has identified ≈300 homologues with a high sequence identity to the Ros protein, including the amino acids that form the extensive hydrophobic core in Ros. Surprisingly, the Cys ₂ His ₂ zinc coordination sphere is generally poorly conserved in the Ros homologues, raising the question of whether the zinc ion is always preserved in these proteins. Here, we present a functional and structural study of a point mutant of Ros protein, Ros _56–142 C82D, in which the second coordinating cysteine is replaced by an aspartate, 5 previously-uncharacterized representative Ros homologues from Mesorhizobium loti , and 2 mutants of the homologues. Our results indicate that the prokaryotic zinc-finger domain, which in Ros protein tetrahedrally coordinates Zn(II) through the typical Cys ₂ His ₂ coordination, in Ros homologues can either exploit a CysAspHis ₂ coordination sphere, previously never described in DNA binding zinc finger domains to our knowledge, or lose the metal, while still preserving the DNA-binding activity. We demonstrate that this class of prokaryotic zinc-finger domains is structurally very adaptable, and surprisingly single mutations can transform a zinc-binding domain into a nonzinc-binding domain and vice versa, without affecting the DNA-binding ability. In light of our findings an evolutionary link between the prokaryotic and eukaryotic zinc-finger domains, based on bacteria-to-eukaryota horizontal gene transfer, is discussed.

The purpose of this study is to investigate the current status of contamination due to the heavy metal and organic substances (PAHs, HC >12, organotin compounds, PCB, DDD, DDE, DDT) pollution of the sediments from the coastal area of the Bagnoli brownfield (Naples, Italy) and draw some hypotheses on the origin and trends of industrial and also geogenic contamination. Surface sediments and cores were collected and analysed. The results showed remarkable concentrations of heavy metals, PAHs, and other substances that are significantly higher than the national guideline values of sea sediment quality. Correlation analyses and spatial distribution analyses showed that generally the inorganic and organic pollutants have similar patterns, confirming the common origin from the industrial activity, but also that some of the studied metals have some natural contribution originated from the geologic setting of the area. The distribution of most of the heavy metals (especially Cd, Hg, Pb, Cu, Zn, partially Cr and Ni) and PAHs are similar, and the highest concentrations were recognised between and just off the piers, but a diffuse contamination is widespread up to the external areas of the site perimeter, rising concern on the diffusion of contaminants to the whole Gulf of Pozzuoli.