Rashik Ahmed

Dr. Rashik Ahmed


Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 August 2017 in Journal of the American Chemical Society
Verified
Journal Article
Closed access
RARashik Ahmed
Rashik Ahmed
BVBryan VanSchouwen
Bryan VanSchouwen
NJNaeimeh Jafari
Naeimeh Jafari
XNXiaodan Ni
Xiaodan Ni
JOJoaquin Ortega
Joaquin Ortega
GMGiuseppe Melacini
Giuseppe Melacini

21 May 2019 in Chemical Science
Verified
Journal Article
Open access
PDF file
RARashik Ahmed
Rashik Ahmed
MAMichael Akcan
Michael Akcan
AKAdree Khondker
Adree Khondker
Maikel RheinstadterMaikel Rheinstadter
Maikel Rheinstadter
JBJosé C. Bozelli
José C. Bozelli
GMGiuseppe Melacini
Giuseppe Melacini
Atomic resolution map of the soluble amyloid beta assembly (Aβn) “toxic surfaces” that facilitate the early pathogenic events in Alzheimer's disease (AD).

1 October 2017 in Journal of Biological Chemistry
Verified
Journal Article
Open access
PDF file
MAMoustafa Algamal
Moustafa Algamal
RARashik Ahmed
Rashik Ahmed
NJNaeimeh Jafari
Naeimeh Jafari
BABilal Ahsan
Bilal Ahsan
JOJoaquin Ortega
Joaquin Ortega
GMGiuseppe Melacini
Giuseppe Melacini
Self-association of amyloid β (Aβ) peptides is a hallmark of Alzheimer's disease and serves as a general prototype for amyloid formation. A key endogenous inhibitor of Aβ self-association is human serum albumin (HSA), which binds ∼90% of plasma Aβ. However, the exact molecular mechanism by which HSA binds Aβ monomers and protofibrils is not fully understood. Here, using dark-state exchange saturation transfer NMR and relaxation experiments complemented by morphological characterization, we mapped the HSA-Aβ interactions at atomic resolution by examining the effects of HSA on Aβ monomers and soluble high-molecular weight oligomeric protofibrils. We found that HSA binds both monomeric and protofibrillar Aβ, but the affinity of HSA for Aβ monomers is lower than for Aβ protofibrils (Kd values are submillimolar rather than micromolar) yet physiologically relevant because of the ∼0.6–0.7 mm plasma HSA concentration. In both Aβ protofibrils and monomers, HSA targets key Aβ self-recognition sites spanning the β strands found in cross-β protofibril structures, leading to a net switch from direct to tethered contacts between the monomeric Aβ and the protofibril surface. These HSA-Aβ interactions are isoform-specific, because the HSA affinity of Aβ monomers is lower for Aβ(1–42) than for Aβ(1–40). In addition, the HSA-induced perturbations of the monomer/protofibrils pseudo-equilibrium extend to the C-terminal residues in the Aβ(1–42) isoform but not in Aβ(1–40). These results provide an unprecedented view of how albumin interacts with Aβ and illustrate the potential of dark-state exchange saturation transfer NMR in mapping the interactions between amyloid-inhibitory proteins and amyloidogenic peptides.

6 August 2020 in Molecules
Verified
Journal Article
Open access
PDF file
KPKarla Martinez Pomier
Karla Martinez Pomier
RARashik Ahmed
Rashik Ahmed
GMGiuseppe Melacini
Giuseppe Melacini
Protein misfolding as well as the subsequent self-association and deposition of amyloid aggregates is implicated in the progression of several neurodegenerative disorders including Alzheimer’s and Parkinson’s diseases. Modulators of amyloidogenic aggregation serve as essential tools to dissect the underlying molecular mechanisms and may offer insight on potential therapeutic solutions. These modulators include green tea catechins, which are potent inhibitors of amyloid aggregation. Although catechins often exhibit poor pharmacokinetic properties and bioavailability, they are still essential tools for identifying the drivers of amyloid aggregation and for developing other aggregation modulators through structural mimicry. As an illustration of such strategies, here we review how catechins have been used to map the toxic surfaces of oligomeric amyloid-like species and develop catechin-based phenolic compounds with enhanced anti-amyloid activity.

16 April 2018 in Chemical Communications
Verified
Journal Article
Closed access
PDF file
RARashik Ahmed
Rashik Ahmed
GMGiuseppe Melacini
Giuseppe Melacini
The self-association of the amyloid beta (Aβ) peptide into toxic oligomers is implicated in the early events leading to Alzheimer's disease (AD). Blocking the formation of Aβ oligomers and their interactions with the extracellular and cellular environment through small molecules and biopharmaceuticals is therefore a promising preventive strategy for AD. However, given the heterogeneity and transient nature of the Aβ oligomeric species, detailed structural and kinetic characterizations of such oligomers and oligomer:inhibitor complexes have proven to be challenging. Here, we discuss recent advancements in solution NMR that have been instrumental in overcoming these limitations and we provide two representative examples of Aβ inhibitors from our work to demonstrate the applications of such experiments, i.e. EGCG and human serum albumin.

10 May 2019 in Journal of Medicinal Chemistry
Verified
Journal Article
Closed access
SBStephen Boulton
Stephen Boulton
RSRajeevan Selvaratnam
Rajeevan Selvaratnam
RARashik Ahmed
Rashik Ahmed
KVKatherine Van
Katherine Van
XCXiaodong Cheng
Xiaodong Cheng
GMGiuseppe Melacini
Giuseppe Melacini