Rajarshi Chakrabarti

Dr. Rajarshi Chakrabarti

Thomas Jefferson University, Philadelphia, Mississippi, USA
orcid

Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 November 2017 in Journal of Cell Biology
Verified
Journal Article
Open access
PDF file
RCRajarshi Chakrabarti
Rajarshi Chakrabarti
WJWei-Ke Ji
Wei-Ke Ji
RSRadu V Stan
Radu V Stan
JSJaime de Juan Sanz
Jaime de Juan Sanz
TRTimothy A. Ryan
Timothy A. Ryan
HHHenry N. Higgs
Henry N. Higgs
Mitochondrial division requires division of both the inner and outer mitochondrial membranes (IMM and OMM, respectively). Interaction with endoplasmic reticulum (ER) promotes OMM division by recruitment of the dynamin Drp1, but effects on IMM division are not well characterized. We previously showed that actin polymerization through ER-bound inverted formin 2 (INF2) stimulates Drp1 recruitment in mammalian cells. Here, we show that INF2-mediated actin polymerization stimulates a second mitochondrial response independent of Drp1: a rise in mitochondrial matrix calcium through the mitochondrial calcium uniporter. ER stores supply the increased mitochondrial calcium, and the role of actin is to increase ER–mitochondria contact. Myosin IIA is also required for this mitochondrial calcium increase. Elevated mitochondrial calcium in turn activates IMM constriction in a Drp1-independent manner. IMM constriction requires electron transport chain activity. IMM division precedes OMM division. These results demonstrate that actin polymerization independently stimulates the dynamics of both membranes during mitochondrial division: IMM through increased matrix calcium, and OMM through Drp1 recruitment.

20 November 2017 in Journal of Cell Biology
Verified
Journal Article
Open access
PDF file
WJWei-Ke Ji
Wei-Ke Ji
RCRajarshi Chakrabarti
Rajarshi Chakrabarti
XFXintao Fan
Xintao Fan
LSLori Schoenfeld
Lori Schoenfeld
SSStefan Strack
Stefan Strack
HHHenry N. Higgs
Henry N. Higgs
Drp1 is a dynamin guanosine triphosphatase important for mitochondrial and peroxisomal division. Drp1 oligomerization and mitochondrial recruitment are regulated by multiple factors, including interaction with mitochondrial receptors such as Mff, MiD49, MiD51, and Fis. In addition, both endoplasmic reticulum (ER) and actin filaments play positive roles in mitochondrial division, but mechanisms for their roles are poorly defined. Here, we find that a population of Drp1 oligomers is associated with ER in mammalian cells and is distinct from mitochondrial or peroxisomal Drp1 populations. Subpopulations of Mff and Fis1, which are tail-anchored proteins, also localize to ER. Drp1 oligomers assemble on ER, from which they can transfer to mitochondria. Suppression of Mff or inhibition of actin polymerization through the formin INF2 significantly reduces all Drp1 oligomer populations (mitochondrial, peroxisomal, and ER bound) and mitochondrial division, whereas Mff targeting to ER has a stimulatory effect on division. Our results suggest that ER can function as a platform for Drp1 oligomerization, and that ER-associated Drp1 contributes to mitochondrial division.

5 June 2023 in Nature Reviews Molecular Cell Biology
Verified
Journal Article
Closed access
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TFTak Shun Fung
Tak Shun Fung
RCRajarshi Chakrabarti
Rajarshi Chakrabarti
HHHenry N. Higgs
Henry N. Higgs

1 May 2021 in Current Biology
Verified
Journal Article
Closed access
RCRajarshi Chakrabarti
Rajarshi Chakrabarti
MLMiriam Lee
Miriam Lee
HHHenry N. Higgs
Henry N. Higgs

8 April 2019 in Nature Cell Biology
Verified
Journal Article
Closed access
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MAMu A
Mu A
TFTak Shun Fung
Tak Shun Fung
AKArminja N. Kettenbach
Arminja N. Kettenbach
RCRajarshi Chakrabarti
Rajarshi Chakrabarti
HHHenry N. Higgs
Henry N. Higgs

15 September 2019 in Journal of Cell Science
Verified
Journal Article
Closed access
PDF file
TFTak Shun Fung
Tak Shun Fung
WJWei-ke Ji
Wei-ke Ji
HHHenry N. Higgs
Henry N. Higgs
RCRajarshi Chakrabarti
Rajarshi Chakrabarti
Recent studies show that mitochondria and actin filaments work together in two contexts: (1) increased cytoplasmic calcium induces cytoplasmic actin polymerization that stimulates mitochondrial fission and (2) mitochondrial depolarization causes actin assembly around mitochondria, with roles in mitophagy. It is unclear whether these two processes utilize similar actin assembly mechanisms. Here, we show that these are distinct actin assembly mechanisms in the acute phase after treatment (<10 min). Calcium-induced actin assembly is INF2 dependent and Arp2/3 complex independent, whereas depolarization-induced actin assembly is Arp2/3 complex dependent and INF2 independent. The two types of actin polymerization are morphologically distinct, with calcium-induced filaments throughout the cytosol and depolarization-induced filaments as ‘clouds’ around depolarized mitochondria. We have previously shown that calcium-induced actin stimulates increases in both mitochondrial calcium and recruitment of the dynamin GTPase Drp1 (also known as DNM1L). In contrast, depolarization-induced actin is temporally associated with extensive mitochondrial dynamics that do not result in mitochondrial fission, but in circularization of the inner mitochondrial membrane (IMM). These dynamics are dependent on the protease OMA1 and independent of Drp1. Actin cloud inhibition causes increased IMM circularization, suggesting that actin clouds limit these dynamics. This article has an associated First Person interview with the first author of the paper.