PENGFEI DONG

Dr. PENGFEI DONG


Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 October 2022 in Applied Sciences
Verified
Journal Article
Open access
PDF file
Yasin ShokrollahiYasin Shokrollahi
Yasin Shokrollahi
PDPENGFEI DONG
PENGFEI DONG
Peshala Thibbotuwawa GamagePeshala Thibbotuwawa Gamage
Peshala Thibbotuwawa Gamage
NPNashaita Patrawalla
Nashaita Patrawalla
Vipuil KishoreVipuil Kishore
Vipuil Kishore
Linxia GuLinxia Gu
Linxia Gu
In this study, a finite element (FE)-based machine learning model was developed to predict the mechanical properties of bioglass (BG)-collagen (COL) composite hydrogels. Based on the experimental observation of BG-COL composite hydrogels with scanning electron microscope, 2000 microstructural images with randomly distributed BG particles were created. The BG particles have diameters ranging from 0.5 µm to 1.5 µm and a volume fraction from 17% to 59%. FE simulations of tensile testing were performed for calculating the Young’s modulus and Poisson’s ratio of 2000 microstructures. The microstructural images and the calculated Young’s modulus and Poisson’s ratio by FE simulation were used for training and testing a convolutional neural network regression model. Results showed that the network developed in this work can effectively predict the mechanical properties of the composite hydrogels. The R-squared values were 95% and 83% for Young’s modulus and Poisson’s ratio, respectively. This work provides a surrogate model of finite element analysis to predict mechanical properties of BG-COL hydrogel using microstructure images, which could be further utilized for characterizing heterogeneous materials in big data-driven material designs.

21 October 2021 in Computers in Biology and Medicine
Verified
Journal Article
Closed access
PGPeshala T. Gamage
Peshala T. Gamage
PDPENGFEI DONG
PENGFEI DONG
JLJuhwan Lee
Juhwan Lee
YGYazan Gharaibeh
Yazan Gharaibeh
VZVladislav N. Zimin
Vladislav N. Zimin
Linxia GuLinxia Gu
Linxia Gu

19 July 2022 in Life
Verified
Journal Article
Open access
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SLShengmao Lin
Shengmao Lin
TPThyagaseely Sheela Premaraj
Thyagaseely Sheela Premaraj
Peshala Thibbotuwawa GamagePeshala Thibbotuwawa Gamage
Peshala Thibbotuwawa Gamage
PDPENGFEI DONG
PENGFEI DONG
SPSundaralingam Prem Premaraj
Sundaralingam Prem Premaraj
Linxia GuLinxia Gu
Linxia Gu
Background and aim: This study evaluates the upper airway flow characteristics, anatomical features and analyzes their correlations with AHI in patients with varied degrees of OSA severity seeking for discernments of the underlying pathophysiological profile. Materials and Methods: Patient-specific computational fluid dynamics models were reconstructed from high-resolution cone-beam computed tomography images for 4 OSA patients classified as minimal, mild, moderate, and severe according to AHI. Results: The parameters, minimal cross-sectional area (MCA), and the pharyngeal airway volume did not show clear correlations with the OSA severity defined according to AHI. No correlations were found between the classically defined resistance of the airway in terms of pressure drop and AHI. The flow analysis further showed that the fluid mechanisms likely to cause airway collapse are associated with the degree of narrowing in the pharyngeal airway rather than AHI. Results also suggested that some patients classified as severe OSA according to the AHI can show less susceptibility to airway collapse than patients with relatively lower AHI values and vice versa. Conclusions: The relative contribution of anatomical and non-anatomical causes to the OSA severity can significantly vary between patients. AHI alone is inadequate to be used as a marker of the pathophysiological profile of OSA. Combining airflow analysis with AHI in diagnosing OSA severity may provide additional details about the underlying pathophysiology, subsequently improving the individualized clinical outcomes.

Verified
Journal Article
Open access
PDF file
AOAmanda Almeida de Oliveira
Amanda Almeida de Oliveira
FPFernanda Priviero
Fernanda Priviero
ADAna Delgado
Ana Delgado
PDPENGFEI DONG
PENGFEI DONG
Valentina Ochoa MendozaValentina Ochoa Mendoza
Valentina Ochoa Mendoza
KNKenia Pedrosa Nunes
Kenia Pedrosa Nunes
This study was designed to connect aortic stiffness to vascular contraction in young male and female Wistar rats. We hypothesized that female animals display reduced intrinsic media-layer stiffness, which associates with improved vascular function. Atomic force microscopy (AFM)-based nanoindentation analysis was used to derive stiffness (Young’s modulus) in biaxially (i.e., longitudinal and circumferential) unloaded aortic rings. Reactivity studies compatible with uniaxial loading (i.e., circumferential) were used to assess vascular responses to a selective α1 adrenergic receptor agonist in the presence or absence of extracellular calcium. Elastin and collagen levels were indirectly evaluated with fluorescence microscopy and a picrosirius red staining kit, respectively. We report that male and female Wistar rats display similar AFM-derived aortic media-layer stiffness, even though female animals withstand higher aortic intima-media thickness-to-diameter ratio than males. Female animals also present reduced phenylephrine-induced aortic force development in concentration-response and time-force curves. Specifically, we observed impaired force displacement in both parts of the contraction curve (Aphasic and Atonic) in experiments conducted with and without extracellular calcium. Additionally, collagen levels were lower in female animals without significant elastin content and fragmentation changes. In summary, sex-related functional differences in isolated aortas appear to be related to dissimilarities in the dynamics of vascular reactivity and extracellular matrix composition rather than a direct response to a shift in intrinsic media-layer stiffness.

31 December 2023 in Applied Sciences
Verified
Journal Article
Open access
PDF file
Yasin ShokrollahiYasin Shokrollahi
Yasin Shokrollahi
PDPENGFEI DONG
PENGFEI DONG
Changchun ZhouChangchun Zhou
Changchun Zhou
XLXianqi Li
Xianqi Li
Linxia GuLinxia Gu
Linxia Gu
Conducting computational stress-strain analysis using finite element methods (FEM) is a common approach when dealing with the complex geometries of atherosclerosis, which is a leading cause of global mortality and complex cardiovascular disease. The considerable expense linked to FEM analysis encourages the substitution of FEM with a considerably faster data-driven machine learning (ML) approach. This study investigated the potential of end-to-end deep learning tools as a more effective substitute for FEM in predicting stress-strain fields within 2D cross sections of arterial walls. We first proposed a U-Net-based fully convolutional neural network (CNN) to predict the von Mises stress and strain distribution based on the spatial arrangement of calcification within arterial wall cross-sections. Further, we developed a conditional generative adversarial network (cGAN) to enhance, particularly from the perceptual perspective, the prediction accuracy of stress and strain field maps for arterial walls with various calcification quantities and spatial configurations. On top of U-Net and cGAN, we also proposed their ensemble approaches to improve the prediction accuracy of field maps further. Our dataset, consisting of input and output images, was generated by implementing boundary conditions and extracting stress-strain field maps. The trained U-Net models can accurately predict von Mises stress and strain fields, with structural similarity index scores (SSIM) of 0.854 and 0.830 and mean squared errors of 0.017 and 0.018 for stress and strain, respectively, on a reserved test set. Meanwhile, the cGAN models in a combination of ensemble and transfer learning techniques demonstrate high accuracy in predicting von Mises stress and strain fields, as evidenced by SSIM scores of 0.890 for stress and 0.803 for strain. Additionally, mean squared errors of 0.008 for stress and 0.017 for strain further support the model’s performance on a designated test set. Overall, this study developed a surrogate model for finite element analysis, which can accurately and efficiently predict stress-strain fields of arterial walls regardless of complex geometries and boundary conditions.

23 June 2022 in Diagnostics
Verified
Journal Article
Open access
PDF file
Yasin ShokrollahiYasin Shokrollahi
Yasin Shokrollahi
PDPENGFEI DONG
PENGFEI DONG
Mehmet KayaMehmet Kaya
Mehmet Kaya
Donny W. SuhDonny W. Suh
Donny W. Suh
Linxia GuLinxia Gu
Linxia Gu
Soccer-related ocular injuries, especially retinal injuries, have attracted increasing attention. The mechanics of a flying soccer ball have induced abnormally higher retinal stresses and strains, and their correlation with retinal injuries has been characterized using the finite element (FE) method. However, FE simulations demand solid mechanical expertise and extensive computational time, both of which are difficult to adopt in clinical settings. This study proposes a framework that combines FE analysis with a machine learning (ML) approach for the fast prediction of retina mechanics. Different impact scenarios were simulated using the FE method to obtain the von Mises stress map and the maximum principal strain map in the posterior retina. These stress and strain patterns, along with their input parameters, were used to train and test a partial least squares regression (PLSR) model to predict the soccer-induced retina stress and strain in terms of distributions and peak magnitudes. The peak von Mises stress and maximum principal strain prediction errors were 3.03% and 9.94% for the frontal impact and were 9.08% and 16.40% for the diagonal impact, respectively. The average prediction error of von Mises stress and the maximum principal strain were 15.62% and 21.15% for frontal impacts and were 10.77% and 21.78% for diagonal impacts, respectively. This work provides a surrogate model of FE analysis for the fast prediction of the dynamic mechanics of the retina in response to the soccer impact, which could be further utilized for developing a diagnostic tool for soccer-related ocular trauma.