Background: Analyzing interactions between vegetation and environmental factors at regional scales provide information for the understanding of species assemblages. Hypotheses: Environmental restrictions at higher elevations produce a decreasing species richness pattern along an elevational gradient and the climatic variables related to temperature and precipitation are the main filters of species distribution. Objectives: (1) To identify the different assemblages of tree species occurring in a biodiversity hotspot; (2) to analyze the pattern of tree species richness along an elevational gradient; and (3) to analyze the environmental filters that determine the species distribution. Study site: Serranías Meridionales of Jalisco in western Mexico. Period of study: 2016-2018. Methods: Thirty-three rectangular 0.1 ha plots were established for vegetation and environmental characterization. Cluster and canonical correspondence analyses were conducted to analyze tree species composition. We defined three groups of variables (climatic, relief and soil) to evaluate the influence of environmental filters. We used generalized linear models to assess the contribution of each group to the spatial variation in species richness. Results: A total of 63 tree species were recorded. The cluster analysis defined eight groups within three forest types. The species richness showed a hump-shaped pattern along the elevational gradient and the climatic and soil variables explained a considerable amount of variation in the species richness. Conclusions: The tree species richness in the Serranías Meridionales de Jalisco is dominated by a striking number of Pinus and Quercus species. This biodiversity hotspot is an important site for the understanding of tree ecological diversification in Mexico.

Special conservation efforts should be made for relict species, as they usually have small population sizes and restricted distributions, placing them in critical extinction risk. To achieve conservation, information about genetic diversity distribution is needed. Here, using nine nuclear microsatellites, we analyzed 23 populations of five recently described species of Magnolia distributed in Mexico, which were previously assigned to Magnolia dealbata. We aimed to determine the level of genetic diversity and the distribution of genetic variation and proposed conservation measures. Compared to other endemic and relict species, we found a moderate level of genetic diversity in most populations; however, we identified two populations with no genetic variation. Additionally, we found evidence of positive values of inbreeding likely due to geitonogamy. We found a strong population structure, low effective population size, and no evidence of bottlenecks. Patterns of genetic differentiation did not support the morphological distinction of five species, so we hypothesized that the gene pools may instead represent well-differentiated populations of a single species. We argue that the pattern of genetic differentiation is explained by the natural fragmentation of the cloud forests after glaciation events, and the effects of genetic drift in small populations poorly connected by gene flow. Despite the moderate levels of genetic diversity, special attention is needed to guarantee conservation, with emphasis on the populations in the central region of the country as well as the valuable populations identified in the southwestern region.