Markus Oppermann

Mr. Markus Oppermann

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Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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12 November 2018 in Nature Genetics
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SMSara G. Milner
Sara G. Milner
MJMatthias Jost
Matthias Jost
STShin Taketa
Shin Taketa
EMElena Rey Mazón
Elena Rey Mazón
AHAxel Himmelbach
Axel Himmelbach
NSNils Stein
Nils Stein

14 March 2020 in New Phytologist
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EPEvangelia A. Papoutsoglou
Evangelia A. Papoutsoglou
DFDaniel Faria
Daniel Faria
DADaniel Arend
Daniel Arend
EAElizabeth Arnaud
Elizabeth Arnaud
IAIoannis Athanasiadis
Ioannis Athanasiadis
CPCyril Pommier
Cyril Pommier
Summary: Enabling data reuse and knowledge discovery is increasingly critical in modern science, and requires an effort towards standardising data publication practices. This is particularly challenging in the plant phenotyping domain, due to its complexity and heterogeneity. We have produced the MIAPPE 1.1 release, which enhances the existing MIAPPE standard in coverage, to support perennial plants, in structure, through an explicit data model, and in clarity, through definitions and examples. We evaluated MIAPPE 1.1 by using it to express several heterogeneous phenotyping experiments in a range of different formats, to demonstrate its applicability and the interoperability between the various implementations. Furthermore, the extended coverage is demonstrated by the fact that one of the datasets could not have been described under MIAPPE 1.0. MIAPPE 1.1 marks a major step towards enabling plant phenotyping data reusability, thanks to its extended coverage, and especially the formalisation of its data model, which facilitates its implementation in different formats. Community feedback has been critical to this development, and will be a key part of ensuring adoption of the standard.

4 October 2022 in Nature Genetics
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ASAlbert W. Schulthess
Albert W. Schulthess
SKSandip M. Kale
Sandip M. Kale
FLFang Liu
Fang Liu
YZYusheng Zhao
Yusheng Zhao
NPNorman Philipp
Norman Philipp
JRJochen Reif
Jochen Reif

31 August 2016 in Nucleic Acids Research
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Stephan WeiseStephan Weise
Stephan Weise
MOMarkus Oppermann
Markus Oppermann
LMLorenzo Maggioni
Lorenzo Maggioni
THTheo van Hintum
Theo van Hintum
HKHelmut Knüpffer
Helmut Knüpffer
The European Search Catalogue for Plant Genetic Resources, EURISCO, provides information about 1.8 million crop plant accessions preserved by almost 400 institutes in Europe and beyond. EURISCO is being maintained on behalf of the European Cooperative Programme for Plant Genetic Resources. It is based on a network of National Inventories of 43 member countries and represents an important effort for the preservation of world's agrobiological diversity by providing information about the large genetic diversity kept by the collaborating collections. Moreover, EURISCO also assists its member countries in fulfilling legal obligations and commitments, e.g. with respect to the International Treaty on Plant Genetic Resources, the Second Global Plan of Action for Plant Genetic Resources for Food and Agriculture of the United Nation's Food and Agriculture Organization, or the Convention on Biological Diversity. EURISCO is accessible at http://eurisco.ecpgr.org.

18 August 2020 in Plants
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Stephan WeiseStephan Weise
Stephan Weise
Ulrike LohwasserUlrike Lohwasser
Ulrike Lohwasser
MOMarkus Oppermann
Markus Oppermann
Genebanks play an important role in the long-term conservation of plant genetic resources and are complementary to the conservation of diversity in farmers’ fields and in nature. In this context, documentation plays a critical role. Without well-structured documentation, it is not possible to make statements about the value of a resource, especially with regard to its potential for breeding and research. In particular, comprehensive information management is a prerequisite for the further development of genebank collections. This requires detailed information about the composition of a collection, thus allowing statements about which species and/or regions of origin are under-represented. This task is of strategic importance, especially due to the threats to crop plants and their wild relatives caused by advancing climate change. Both the actual conservation management and the fulfilment of legal obligations depend on information. Hence, documentation units have been established in almost all genebanks worldwide. They all face the challenge that knowledge about genebank accessions must be permanently managed and passed on across generations. International standards such as Multi-Crop Passport Descriptors (MCPD) have been established for the exchange of data between genebanks, and allow the operation of international information systems, such as the World Information and Early Warning System on Plant Genetic Resources for Food and Agriculture (WIEWS), the European Search Catalogue for Plant Genetic Resources (EURISCO) or Genesys.

24 August 2021 in The Plant Journal
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EBElisa Bellucci
Elisa Bellucci
OAOrlando Mario Aguilar
Orlando Mario Aguilar
SASaleh Alseekh
Saleh Alseekh
KBKirstin Bett
Kirstin Bett
Creola BrezeanuCreola Brezeanu
Creola Brezeanu
Roberto PapaRoberto Papa
Roberto Papa
SUMMARY: Food legumes are crucial for all agriculture‐related societal challenges, including climate change mitigation, agrobiodiversity conservation, sustainable agriculture, food security and human health. The transition to plant‐based diets, largely based on food legumes, could present major opportunities for adaptation and mitigation, generating significant co‐benefits for human health. The characterization, maintenance and exploitation of food‐legume genetic resources, to date largely unexploited, form the core development of both sustainable agriculture and a healthy food system. INCREASE will implement, on chickpea (Cicer arietinum), common bean (Phaseolus vulgaris), lentil (Lens culinaris) and lupin (Lupinus albus and L. mutabilis), a new approach to conserve, manage and characterize genetic resources. Intelligent Collections, consisting of nested core collections composed of single‐seed descent‐purified accessions (i.e., inbred lines), will be developed, exploiting germplasm available both from genebanks and on‐farm and subjected to different levels of genotypic and phenotypic characterization. Phenotyping and gene discovery activities will meet, via a participatory approach, the needs of various actors, including breeders, scientists, farmers and agri‐food and non‐food industries, exploiting also the power of massive metabolomics and transcriptomics and of artificial intelligence and smart tools. Moreover, INCREASE will test, with a citizen science experiment, an innovative system of conservation and use of genetic resources based on a decentralized approach for data management and dynamic conservation. By promoting the use of food legumes, improving their quality, adaptation and yield and boosting the competitiveness of the agriculture and food sector, the INCREASE strategy will have a major impact on economy and society and represents a case study of integrative and participatory approaches towards conservation and exploitation of crop genetic resources.