Simona Strazdaite

Simona Strazdaite

orcid

Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
28 August 2015 in The Journal of Chemical Physics
Verified
Journal Article
Closed access
SSSimona Strazdaite
Simona Strazdaite
JVJan Versluis
Jan Versluis
HBHuib J. Bakker
Huib J. Bakker
We study the structure and orientation of water molecules at water/alkane and water/polydimethylsiloxane interfaces with surface specific intensity and heterodyne-detected vibrational sum-frequency generation (HD-VSFG) spectroscopy. We observe that the hydrogen-bond structure of the water molecules is enhanced at these interfaces compared to the water/air interface. We also find that the water molecules at the interface show a net orientation of their O–H groups pointing towards to the hydrophobic layer.

6 March 2017 in Journal of the American Chemical Society
Verified
Journal Article
Open access
SSSimona Strazdaite
Simona Strazdaite
KMKonrad Meister
Konrad Meister
HBHuib J. Bakker
Huib J. Bakker
We use surface-specific intensity vibrational sum-frequency generation and attenuated total reflection spectroscopy to probe the ionization state of the amino-acids l-alanine and l-proline at the air/water surface and in the bulk. The ionization state is determined by probing the vibrational signatures of the carboxylic acid group, representing the nondissociated acid form, and the carboxylate anion group, representing the dissociated form, over a wide range of pH values. We find that the carboxylic acid group deprotonates at a significantly higher pH at the surface than in the bulk.

6 April 2020 in Langmuir
Verified
Journal Article
Open access
SSSimona Strazdaite
Simona Strazdaite
ENEdvinas Navakauskas
Edvinas Navakauskas
JKJohannes Kirschner
Johannes Kirschner
TŠTomas Šneideris
Tomas Šneideris
Gediminas NiauraGediminas Niaura
Gediminas Niaura
We use vibrational sum-frequency generation (VSFG) spectroscopy to study the structure of hen egg-white lysozyme (HEWL) aggregates adsorbed to DOPG/D2O and air/D2O interfaces. We find that aggregates with a parallel and anti-parallel β-sheet structure together with smaller unordered aggregates and a denaturated protein are adsorbed to both interfaces. We demonstrate that to retrieve this information, fitting of the VSFG spectra is essential. The number of bands contributing to the VSFG spectrum might be misinterpreted, due to interference between peaks with opposite orientation and a non-resonant background. Our study identified hydrophobicity as the main driving force for adsorption to the air/D2O interface. Adsorption to the DOPG/D2O interface is also influenced by hydrophobic interaction; however, electrostatic interaction between charged protein's groups and lipid's head-groups has the most significant effect on the adsorption. We find that the intensity of the VSFG spectrum at the DOPG/D2O interface is strongly enhanced by varying the pH of the solution. We show that this change is not due to a change of lysozyme's and its aggregates' charge, but due to dipole reorientation at the DOPG/D2O interface. This finding suggest that extra care must be taken when interpreting the VSFG spectrum of proteins adsorbed at the lipid/water interface.

4 August 2020 in Molecules
Verified
Journal Article
Open access
PDF file
Martynas TalaikisMartynas Talaikis
Martynas Talaikis
SSSimona Strazdaite
Simona Strazdaite
MZMantas Ziaunys
Mantas Ziaunys
Gediminas NiauraGediminas Niaura
Gediminas Niaura
Several neurodegenerative diseases, like Alzheimer’s and Parkinson’s are linked with protein aggregation into amyloid fibrils. Conformational changes of native protein into the β-sheet structure are associated with a significant change in the vibrational spectrum. This is especially true for amide bands which are inherently sensitive to the secondary structure of a protein. Raman amide bands are greatly intensified under resonance conditions, in the UV spectral range, allowing for the selective probing of the peptide backbone. In this work, we examine parallel β-sheet forming GGVVIA, the C-terminus segment of amyloid-β peptide, using UV–Vis, FTIR, and multiwavelength Raman spectroscopy. We find that amide bands are enhanced far from the expected UV range, i.e., at 442 nm. A reasonable two-fold relative intensity increase is observed for amide II mode (normalized according to the δCH2/δCH3 vibration) while comparing 442 and 633 nm excitations; an increase in relative intensity of other amide bands was also visible. The observed relative intensification of amide II, amide S, and amide III modes in the Raman spectrum recorded at 442 nm comparing with longer wavelength (633/785/830 nm) excited spectra allows unambiguous identification of amide bands in the complex Raman spectra of peptides and proteins containing the β-sheet structure.

1 October 2021 in The Journal of Physical Chemistry B
Verified
Journal Article
Closed access
SSSimona Strazdaite
Simona Strazdaite
SRS. J. Roeters
S. J. Roeters
ASA. Sakalauskas
A. Sakalauskas
TST. Sneideris
T. Sneideris
JKJ. Kirschner
J. Kirschner
GNG. Niaura
G. Niaura

13 October 2017 in The Journal of Physical Chemistry C
Verified
Journal Article
Open access
SSSimona Strazdaite
Simona Strazdaite
JVJ. Versluis
J. Versluis
NON. Ottosson
N. Ottosson
HBHuib J. Bakker
Huib J. Bakker
We use heterodyne-detected vibrational sum-frequency generation (HD-VSFG) to determine the orientation of the molecular plane of methylguanidinium ions at the surface of aqueous solutions. We measure the VSFG response of the symmetric and antisymmetric methyl stretch vibrations of the methylguanidinium ion with different polarization combinations. We find that for at least 50% of the methylguanidinium ions the molecular plane is at an angle >20° with respect to the surface plane. Hence, for only a minor fraction of the ions does the molecular plane have an orientation (near-)parallel to the surface plane, in contrast to the predictions of recent molecular dynamics simulation studies.