Shin-ichiro Fujita

Dr. Shin-ichiro Fujita

Department of Genome Biology, Faculty of Medicine, University of Tsukuba, Ibaraki 305-8575, Japan.
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Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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Verified
Journal Article
Open access
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Takehito SugasawaTakehito Sugasawa
Takehito Sugasawa
SOSeiko Ono
Seiko Ono
MYMASATO YONAMINE
MASATO YONAMINE
SFShin-ichiro Fujita
Shin-ichiro Fujita
YMYuki Matsumoto
Yuki Matsumoto
KTKazuhiro Takekoshi
Kazuhiro Takekoshi
The prevalence of nonalcoholic fatty liver disease (NAFLD) has been rapidly increasing worldwide. A choline-deficient, L-amino acid-defined, high-fat diet (CDAHFD) has been used to create a mouse model of nonalcoholic steatohepatitis (NASH). There are some reports on the effects on mice of being fed a CDAHFD for long periods of 1 to 3 months. However, the effect of this diet over a short period is unknown. Therefore, we examined the effect of 1-week CDAHFD feeding on the mouse liver. Feeding a CDAHFD diet for only 1-week induced lipid droplet deposition in the liver with increasing activity of liver-derived enzymes in the plasma. On the other hand, it did not induce fibrosis or cirrhosis. Additionally, it was demonstrated that CDAHFD significantly impaired mitochondrial respiration with severe oxidative stress to the liver, which is associated with a decreasing mitochondrial DNA copy number and complex proteins. In the gene expression analysis of the liver, inflammatory and oxidative stress markers were significantly increased by CDAHFD. These results demonstrated that 1 week of feeding CDAHFD to mice induces steatohepatitis with mitochondrial dysfunction and severe oxidative stress, without fibrosis, which can partially mimic the early stage of NASH in humans.

1 July 2021 in iScience
Verified
Journal Article
Open access
KYKeisuke Yoshida
Keisuke Yoshida
SFShin-ichiro Fujita
Shin-ichiro Fujita
AIAyako Isotani
Ayako Isotani
TKTakashi Kudo
Takashi Kudo
Satoru TakahashiSatoru Takahashi
Satoru Takahashi
SIShunsuke Ishii
Shunsuke Ishii
As space travel becomes more accessible, it is important to understand the effects of spaceflight including microgravity, cosmic radiation, and psychological stress. However, the effect on offspring has not been well studied in mammals. Here we investigated the effect of 35 days spaceflight on male germ cells. Male mice that had experienced spaceflight exhibit alterations in binding of transcription factor ATF7, a regulator of heterochromatin formation, on promoter regions in testis, as well as altered small RNA expression in spermatozoa. Offspring of space-traveling males exhibit elevated hepatic expression of genes related to DNA replication. These results indicate that spaceflight has intergenerational effect.

11 September 2020 in Life
Verified
Journal Article
Open access
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SFShin-ichiro Fujita
Shin-ichiro Fujita
LRLindsay Rutter
Lindsay Rutter
QOQuang Ong
Quang Ong
MMMasafumi Muratani
Masafumi Muratani
Rodent models have been widely used as analogs for estimating spaceflight-relevant molecular mechanisms in human tissues. NASA GeneLab provides access to numerous spaceflight omics datasets that can potentially generate novel insights and hypotheses about fundamental space biology when analyzed in new and integrated fashions. Here, we performed a pilot study to elucidate space biological mechanisms across tissues by reanalyzing mouse RNA-sequencing spaceflight data archived on NASA GeneLab. Our results showed that clock gene expressions in spaceflight mice were altered compared with those in ground control mice. Furthermore, the results suggested that spaceflight promotes asynchrony of clock gene expressions between peripheral tissues. Abnormal circadian rhythms are associated not only with jet lag and sleep disorders but also with cancer, lifestyle-related diseases, and mental disorders. Overall, our findings highlight the importance of elucidating the causes of circadian rhythm disruptions using the unique approach of space biology research to one day potentially develop countermeasures that benefit humans on Earth and in space.

16 August 2021 in Genes
Verified
Journal Article
Open access
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Takehito SugasawaTakehito Sugasawa
Takehito Sugasawa
TNTakuro Nakano
Takuro Nakano
SFShin-ichiro Fujita
Shin-ichiro Fujita
YMYuki Matsumoto
Yuki Matsumoto
GIGenki Ishihara
Genki Ishihara
KTKazuhiro Takekoshi
Kazuhiro Takekoshi
Despite the World Anti-Doping Agency (WADA) ban on gene doping in the context of advancements in gene therapy, the risk of EPO gene-based doping among athletes is still present. To address this and similar risks, gene-doping tests are being developed in doping control laboratories worldwide. In this regard, the present study was performed with two objectives: to develop a robust gene-doping mouse model with the human EPO gene (hEPO) transferred using recombinant adenovirus (rAdV) as a vector and to develop a detection method to identify gene doping by using this model. The rAdV including the hEPO gene was injected intravenously to transfer the gene to the liver. After injection, the mice showed significantly increased whole-blood red blood cell counts and increased expression of hematopoietic marker genes in the spleen, indicating successful development of the gene-doping model. Next, direct and potentially indirect proof of gene doping were evaluated in whole-blood DNA and RNA by using a quantitative PCR assay and RNA sequencing. Proof of doping could be detected in DNA and RNA samples from one drop of whole blood for approximately a month; furthermore, the overall RNA expression profiles showed significant changes, allowing advanced detection of hEPO gene doping.

30 April 2021 in Genes
Verified
Journal Article
Open access
PDF file
Takehito SugasawaTakehito Sugasawa
Takehito Sugasawa
SFShin-ichiro Fujita
Shin-ichiro Fujita
TKTomoaki Kuji
Tomoaki Kuji
NINoriyo Ishibashi
Noriyo Ishibashi
KTKenshirou Tamai
Kenshirou Tamai
KTKazuhiro Takekoshi
Kazuhiro Takekoshi
Plasma cell-free DNA (cfDNA) is frequently analyzed using liquid biopsy to investigate cancer markers. We hypothesized that this concept might be applicable in exercise physiology. Here, we aimed to identify specific cfDNA (spcfDNA) sequences in the plasma of healthy humans using next-generation sequencing (NGS) and clearly define the dynamics regarding spcfDNA-fragment levels upon extreme exercises, such as running a full marathon. NGS analysis was performed using cfDNA of pooled plasma collected from healthy participants. We confirmed that the TaqMan-qPCR assay had high sensitivity and found that the spcfDNA sequence abundance was 16,600-fold higher than that in a normal genomic region. We then used the TaqMan-qPCR assay to investigate the dynamics of spcfDNA-fragment levels upon running a full marathon. The spcfDNA fragment levels were significantly increased post-marathon. Furthermore, spcfDNA fragment levels were strongly correlated with white blood cell and plasma myoglobin concentrations. These results suggest the spcfDNA fragments identified in this study were highly sensitive as markers of extreme physical stress. The findings of this study may provide new insights into exercise physiology and genome biology in humans.

1 July 2021 in Preprints.org
Verified
Preprint
Open access
TSTakehito Sugasawa
Takehito Sugasawa
TNTakuro Nakano
Takuro Nakano
SFShin-ichiro Fujita
Shin-ichiro Fujita
YMYuki Matsumoto
Yuki Matsumoto
GIGenki Ishihara
Genki Ishihara
KTKazuhiro Takekoshi
Kazuhiro Takekoshi
The World Anti-Doping Agency (WADA) has prohibited gene doping in the context of progress in gene therapy. In addition, there is a risk of the EPO gene being applied in gene doping among athletes. Along with this, development of a gene-doping test has been underway in worldwide. Here, we had two purposes: to develop a robust gene doping mouse model using the human EPO gene (hEPO) transferred using recombinant adenovirus (rAdV) as a vector and to develop a detection method to prove gene doping using this model. The rAdV including the hEPO gene were injected intravenously to transfer the gene to the liver. After injection, the mice developed significantly increased red blood cell counts in whole blood and increased gene expressions of hematopoietic markers in the spleen, indicating successful development of the gene doping model. Next, we detected direct and indirect proof of gene doping in whole blood DNA and RNA using qPCR assay and RNA sequencing. Proof was detected in one drop of whole blood DNA and RNA over a long period; furthermore, the overall RNA expression profiles significantly changed. Therefore, we have advanced detection of hEPO gene doping in humans.