Prasad Phapale

Dr. Prasad Phapale

orcid

Research Focus & Metrics

Academic Career Length

19Years (2008-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 August 2016 in Nature Biotechnology
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Journal Article
Open access
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MWMingxun Wang
Mingxun Wang
JCJeremy J Carver
Jeremy J Carver
VPVanessa Phelan
Vanessa Phelan
LSLaura Sanchez
Laura Sanchez
NGNeha Garg
Neha Garg
NBNuno Bandeira
Nuno Bandeira
GNPS is an open-access community-curated analysis platform for sharing natural product mass spectrometry data that enables continuous, automatic reanalysis of deposited 'living' data sets. The potential of the diverse chemistries present in natural products (NP) for biotechnology and medicine remains untapped because NP databases are not searchable with raw data and the NP community has no way to share data other than in published papers. Although mass spectrometry (MS) techniques are well-suited to high-throughput characterization of NP, there is a pressing need for an infrastructure to enable sharing and curation of data. We present Global Natural Products Social Molecular Networking (GNPS; http://gnps.ucsd.edu ), an open-access knowledge base for community-wide organization and sharing of raw, processed or identified tandem mass (MS/MS) spectrometry data. In GNPS, crowdsourced curation of freely available community-wide reference MS libraries will underpin improved annotations. Data-driven social-networking should facilitate identification of spectra and foster collaborations. We also introduce the concept of 'living data' through continuous reanalysis of deposited data.

14 November 2016 in Nature Methods
Verified
Journal Article
Closed access
APAndrew Palmer
Andrew Palmer
Prasad PhapalePrasad Phapale
Prasad Phapale
ICIlya Chernyavsky
Ilya Chernyavsky
RLRegis Lavigne
Regis Lavigne
DFDominik Fay
Dominik Fay
TATheodore Alexandrov
Theodore Alexandrov

5 July 2021 in Nature Methods
Verified
Journal Article
Closed access
PDF file
LRLuca Rappez
Luca Rappez
MSMira Stadler
Mira Stadler
SSSergio Heli Triana Sierra
Sergio Heli Triana Sierra
RGRose Muthoni Gathungu
Rose Muthoni Gathungu
KOKatja Ovchinnikova
Katja Ovchinnikova
TATheodore Alexandrov
Theodore Alexandrov

8 September 2021 in Nature
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Journal Article
Closed access
PDF file
MKMartina Klünemann
Martina Klünemann
SASergej Andrejev
Sergej Andrejev
SBSonja Blasche
Sonja Blasche
AMAndre Mateus
Andre Mateus
Prasad PhapalePrasad Phapale
Prasad Phapale
KPKiran R. Patil
Kiran R. Patil

1 August 2019 in Cell Stem Cell
Verified
Journal Article
Closed access
PRPatricia Rusu
Patricia Rusu
CSChunxuan Shao
Chunxuan Shao
ANAnna Neuerburg
Anna Neuerburg
AAAzer Aylin Acikgöz
Azer Aylin Acikgöz
YWYonghe Wu
Yonghe Wu
HLHai-Kun Liu
Hai-Kun Liu

21 December 2017 in Nature Protocols
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Journal Article
Closed access
PDF file
IPIvan Protsyuk
Ivan Protsyuk
AMAlexey V Melnik
Alexey V Melnik
LNLouis-Felix Nothias
Louis-Felix Nothias
LRLuca Rappez
Luca Rappez
Prasad PhapalePrasad Phapale
Prasad Phapale
TATheodore Alexandrov
Theodore Alexandrov