Paula Paulo

Dr. Paula Paulo

Cancer Genetics Group, Research Center of the Portuguese Oncology Institute of Porto (CI-IPOP), Portugal

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
Verified
Journal Article
Open access
PDF file
Andreia BrandaoAndreia Brandao
Andreia Brandao
PPPaula Paulo
Paula Paulo
MTManuel R. Teixeira
Manuel R. Teixeira
Prostate cancer (PrCa) ranks among the top five cancers for both incidence and mortality worldwide. A significant proportion of PrCa susceptibility has been attributed to inherited predisposition, with 10–20% of cases expected to occur in a hereditary/familial context. Advances in DNA sequencing technologies have uncovered several moderate- to high-penetrance PrCa susceptibility genes, most of which have previously been related to known hereditary cancer syndromes, namely the hereditary breast and ovarian cancer (BRCA1, BRCA2, ATM, CHEK2, and PALB2) and Lynch syndrome (MLH1, MSH2, MSH6, and PMS2) genes. Additional candidate genes have also been suggested, but further evidence is needed to include them in routine genetic testing. Recommendations based on clinical features, family history, and ethnicity have been established for more cost-efficient genetic testing of patients and families who may be at an increased risk of developing PrCa. The identification of alterations in PrCa predisposing genes may help to inform screening strategies, as well as treatment options, in the metastatic setting. This review provides an overview of the genetic basis underlying hereditary predisposition to PrCa, the current genetic screening recommendations, and the implications for clinical management of the disease.

16 April 2018 in PLOS Genetics
Verified
Journal Article
Open access
PDF file
PPPaula Paulo
Paula Paulo
SMSofia Maia
Sofia Maia
CPCarla Pinto
Carla Pinto
PPPedro Pinto
Pedro Pinto
AMAugusta Monteiro
Augusta Monteiro
MTManuel R. Teixeira
Manuel R. Teixeira
Considering that mutations in known prostate cancer (PrCa) predisposition genes, including those responsible for hereditary breast/ovarian cancer and Lynch syndromes, explain less than 5% of early-onset/familial PrCa, we have sequenced 94 genes associated with cancer predisposition using next generation sequencing (NGS) in a series of 121 PrCa patients. We found monoallelic truncating/functionally deleterious mutations in seven genes, including ATM and CHEK2, which have previously been associated with PrCa predisposition, and five new candidate PrCa associated genes involved in cancer predisposing recessive disorders, namely RAD51C, FANCD2, FANCI, CEP57 and RECQL4. Furthermore, using in silico pathogenicity prediction of missense variants among 18 genes associated with breast/ovarian cancer and/or Lynch syndrome, followed by KASP genotyping in 710 healthy controls, we identified “likely pathogenic” missense variants in ATM, BRIP1, CHEK2 and TP53. In conclusion, this study has identified putative PrCa predisposing germline mutations in 14.9% of early-onset/familial PrCa patients. Further data will be necessary to confirm the genetic heterogeneity of inherited PrCa predisposition hinted in this study. Prostate cancer (PrCa) is the most frequent cancer diagnosed in men worldwide, estimated to be responsible for the death of 27,540 men in the United States in 2015. Contrarily to other cancer types, the genetic contribution to the 10–20% of PrCa cases occurring in families with aggregation of the disease is largely unknown. Germline mutations in the BRCA2 and the MSH2 breast and colon cancer predisposing genes, respectively, explain only about 1.5% of our early-onset/familial PrCa cases. Taking advantage of recent deep sequencing technologies and an analysis pipeline established in our group, we have screened 121 PrCa patients with strong evidence of an hereditary component for mutations in 94 genes involved in several cancer predisposing syndromes. We found truncating/functionally deleterious mutations in seven genes and “likely pathogenic” missense variants in four genes, of which five and one, respectively, have not been previously associated with PrCa predisposition. We believe this study significantly contributes to the understanding of the genetic heterogeneity behind early-onset/familial PrCa.

4 November 2020 in Cancers
Verified
Journal Article
Open access
PDF file
Andreia BrandaoAndreia Brandao
Andreia Brandao
PPPaula Paulo
Paula Paulo
SMSofia Maia
Sofia Maia
MPManuela Pinheiro
Manuela Pinheiro
APAna Peixoto
Ana Peixoto
MTManuel R. Teixeira
Manuel R. Teixeira
The identification of recurrent founder variants in cancer predisposing genes may have important implications for implementing cost-effective targeted genetic screening strategies. In this study, we evaluated the prevalence and relative risk of the CHEK2 recurrent variant c.349A>G in a series of 462 Portuguese patients with early-onset and/or familial/hereditary prostate cancer (PrCa), as well as in the large multicentre PRACTICAL case–control study comprising 55,162 prostate cancer cases and 36,147 controls. Additionally, we investigated the potential shared ancestry of the carriers by performing identity-by-descent, haplotype and age estimation analyses using high-density SNP data from 70 variant carriers belonging to 11 different populations included in the PRACTICAL consortium. The CHEK2 missense variant c.349A>G was found significantly associated with an increased risk for PrCa (OR 1.9; 95% CI: 1.1–3.2). A shared haplotype flanking the variant in all carriers was identified, strongly suggesting a common founder of European origin. Additionally, using two independent statistical algorithms, implemented by DMLE+2.3 and ESTIAGE, we were able to estimate the age of the variant between 2300 and 3125 years. By extending the haplotype analysis to 14 additional carrier families, a shared core haplotype was revealed among all carriers matching the conserved region previously identified in the high-density SNP analysis. These findings are consistent with CHEK2 c.349A>G being a founder variant associated with increased PrCa risk, suggesting its potential usefulness for cost-effective targeted genetic screening in PrCa families.

12 July 2023 in Genes, Chromosomes and Cancer
Verified
Journal Article
Open access
PPPaula Paulo
Paula Paulo
MCMarta Cardoso
Marta Cardoso
Andreia BrandaoAndreia Brandao
Andreia Brandao
PPPedro Pinto
Pedro Pinto
AFAriane Falconi
Ariane Falconi
MTManuel R. Teixeira
Manuel R. Teixeira
Prostate cancer (PrCa) is one of the three most frequent and deadliest cancers worldwide. The discovery of PARP inhibitors for the treatment of tumors with deleterious variants in homologous recombination repair (HRR) genes has placed PrCa on the roadmap of precision medicine. However, the overall contribution of HRR genes to the 10%-20% of carcinomas arising in men with early-onset/familial PrCa has not been fully clarified. We used targeted next-generation sequencing (T-NGS) covering eight HRR genes (ATM, BRCA1, BRCA2, BRIP1, CHEK2, NBN, PALB2, and RAD51C) and an analysis pipeline querying both small and large genomic variations to clarify their global and relative contribution to hereditary PrCa predisposition in a series of 462 early-onset/familial PrCa cases. Deleterious variants were found in 3.9% of the patients, with CHEK2 and ATM being the most frequently mutated genes (38.9% and 22.2% of the carriers, respectively), followed by PALB2 and NBN (11.1% of the carriers, each), and finally by BRCA2, RAD51C, and BRIP1 (5.6% of the carriers, each). Using the same NGS data, exonic rearrangements were found in two patients, one pathogenic in BRCA2 and one of unknown significance in BRCA1. These results contribute to clarify the genetic heterogeneity that underlies PrCa predisposition in the early-onset and familial disease, respectively.

16 July 2024 in Journal of Biomedical Science
Verified
Journal Article
Open access
PDF file
MSMaria P. Silva
Maria P. Silva
LFLuísa T. Ferreira
Luísa T. Ferreira
NBNatércia F. Brás
Natércia F. Brás
LTLurdes Torres
Lurdes Torres
ABAndreia Brandão
Andreia Brandão
PPPaula Paulo
Paula Paulo
Background: Prostate cancer (PrCa) is the most frequently diagnosed cancer in men. Variants in known moderate- to high-penetrance genes explain less than 5% of the cases arising at early-onset (< 56 years) and/or with familial aggregation of the disease. Considering that BubR1 is an essential component of the mitotic spindle assembly checkpoint, we hypothesized that monoallelic BUB1B variants could be sufficient to fuel chromosomal instability (CIN), potentially triggering (prostate) carcinogenesis. Methods: To unveil BUB1B as a new PrCa predisposing gene, we performed targeted next-generation sequencing in germline DNA from 462 early-onset/familial PrCa patients and 1,416 cancer patients fulfilling criteria for genetic testing for other hereditary cancer syndromes. To explore the pan-cancer role of BUB1B, we used in silico BubR1 molecular modeling, in vitro gene-editing, and ex vivo patients’ tumors and peripheral blood lymphocytes. Results: Rare BUB1B variants were found in ~ 1.9% of the early-onset/familial PrCa cases and in ~ 0.6% of other cancer patients fulfilling criteria for hereditary disease. We further show that BUB1B variants lead to decreased BubR1 expression and/or stability, which promotes increased premature chromatid separation and, consequently, triggers CIN, driving resistance to Taxol-based therapies. Conclusions: Our study shows that different BUB1B variants may uncover a trigger for CIN-driven carcinogenesis, supporting the role of BUB1B as a (pan)-cancer predisposing gene with potential impact on genetic counseling and treatment decision-making.

14 August 2025 in Molecular Oncology
Verified
Journal Article
Open access
EPElsa Gomes Paiva
Elsa Gomes Paiva
BOBernardo Orr
Bernardo Orr
AAAna Azeredo
Ana Azeredo
ABAndreia Brandão
Andreia Brandão
MTManuel R. Teixeira
Manuel R. Teixeira
PPPaula Paulo
Paula Paulo
Prostate cancer (PCa) is the fifth leading cause of cancer‐related death. The lack of data linking genomic alterations to targeted treatment strategies has hindered progress in disease management. Genomic rearrangements involving the ETS transcription factors ERG or ETV1 are among the most frequent genetic alterations in PCa; however, their clinical utility remains elusive. Using PCa cells overexpressing ETV1 or ERG, representing early and advanced disease stages, we unveiled a positive feedback loop between ETV1 and EGFR, with STAT3 acting as a downstream effector of ETV1–EGFR signaling. Analysis of external datasets revealed that both EGFR and STAT3 are significantly upregulated in ETV1‐positive PCa, consistent with ChIP‐seq data identifying them as direct ETV1 targets. Accordingly, combined inhibition of EGFR and STAT3 using Erlotinib and TTI‐101, respectively, led to a significant reduction in 2D and 3D cell growth of early and advanced PCa cells overexpressing ETV1. Collectively, our findings highlight EGFR–STAT3 activation as a novel ETV1‐regulated oncogenic pathway, providing a rationale for repurposing EGFR inhibitors in combination with STAT3 inhibitors as a therapeutic strategy for the 8–10% of prostate carcinomas characterized by ETV1 rearrangements/overexpression.