Data assimilation is used in atmospheric chemistry models to improve air quality forecasts, construct re-analyses of three-dimensional chemical (including aerosol) concentrations and perform inverse modeling of input variables or model parameters (e.g., emissions). Coupled chemistry meteorology models (CCMM) are atmospheric chemistry models that simulate meteorological processes and chemical transformations jointly. They offer the possibility to assimilate both meteorological and chemical data; however, because CCMM are fairly recent, data assimilation in CCMM has been limited to date. We review here the current status of data assimilation in atmospheric chemistry models with a particular focus on future prospects for data assimilation in CCMM. We first review the methods available for data assimilation in atmospheric models, including variational methods, ensemble Kalman filters, and hybrid methods. Next, we review past applications that have included chemical data assimilation in chemical transport models (CTM) and in CCMM. Observational data sets available for chemical data assimilation are described, including surface data, surface-based remote sensing, airborne data, and satellite data. Several case studies of chemical data assimilation in CCMM are presented to highlight the benefits obtained by assimilating chemical data in CCMM. A case study of data assimilation to constrain emissions is also presented. There are few examples to date of joint meteorological and chemical data assimilation in CCMM and potential difficulties associated with data assimilation in CCMM are discussed. As the number of variables being assimilated increases, it is essential to characterize correctly the errors; in particular, the specification of error cross-correlations may be problematic. In some cases, offline diagnostics are necessary to ensure that data assimilation can truly improve model performance. However, the main challenge is likely to be the paucity of chemical data available for assimilation in CCMM.

The paper presents the transport module of the System for Integrated modeLling of Atmospheric coMposition SILAM v.5 based on the advection algorithm of Michael Galperin. This advection routine, so far weakly presented in the international literature, is positively defined, stable at any Courant number, and efficient computationally. We present the rigorous description of its original version, along with several updates that improve its monotonicity and shape preservation, allowing for applications to long-living species in conditions of complex atmospheric flows. The scheme is connected with other parts of the model in a way that preserves the sub-grid mass distribution information that is a cornerstone of the advection algorithm. The other parts include the previously developed vertical diffusion algorithm combined with dry deposition, a meteorological pre-processor, and chemical transformation modules. The quality of the advection routine is evaluated using a large set of tests. The original approach has been previously compared with several classic algorithms widely used in operational dispersion models. The basic tests were repeated for the updated scheme and extended with real-wind simulations and demanding global 2-D tests recently suggested in the literature, which allowed one to position the scheme with regard to sophisticated state-of-the-art approaches. The advection scheme performance was fully comparable with other algorithms, with a modest computational cost. This work was the last project of Dr. Sci. Michael Galperin, who passed away on 18 March 2008.

This paper presents the first ensemble modelling experiment in relation to birch pollen in Europe. The seven-model European ensemble of MACC-ENS, tested in trial simulations over the flowering season of 2010, was run through the flowering season of 2013. The simulations have been compared with observations in 11 countries, all members of the European Aeroallergen Network, for both individual models and the ensemble mean and median. It is shown that the models successfully reproduced the timing of the very late season of 2013, generally within a couple of days from the observed start of the season. The end of the season was generally predicted later than observed, by 5 days or more, which is a known feature of the source term used in the study. Absolute pollen concentrations during the season were somewhat underestimated in the southern part of the birch habitat. In the northern part of Europe, a record-low pollen season was strongly overestimated by all models. The median of the multi-model ensemble demonstrated robust performance, successfully eliminating the impact of outliers, which was particularly useful since for most models this was the first experience of pollen forecasting.

Volatilization of ammonia (NH₃) from fertilizers and livestock wastes forms a significant pathway of nitrogen losses in agricultural ecosystems and constitutes the largest source of atmospheric emissions of NH₃. This paper describes a major update to the process model FAN (Flow of Agricultural Nitrogen), which evaluates NH₃ emissions interactively within an Earth system model; in this work, the Community Earth System Model (CESM) is used. The updated version (FANv2) includes a more detailed treatment of both physical and agricultural processes, which allows the model to differentiate between the volatilization losses from animal housings, manure storage, grazed pastures, and the application of manure and different types of mineral fertilizers. The modeled ammonia emissions are first evaluated at a local scale against experimental data for various types of fertilizers and manure, and they are subsequently run globally to evaluate NH₃ emissions for 2010–2015 based on gridded datasets of fertilizer use and livestock populations. Comparison of regional emissions shows that FANv2 agrees with previous inventories for North America and Europe and is within the range of previous inventories for China. However, due to higher NH₃ emissions in Africa, India, and Latin America, the global emissions simulated by FANv2 (48 Tg N) are 30 %–40 % higher than in the existing inventories.

Better monitoring, reporting, and verification (MRV) of the amount, additionality, and persistence of the sequestered soil carbon is needed to understand the best carbon farming practices for different soils and climate conditions, as well as their actual climate benefits or cost efficiency in mitigating greenhouse gas emissions. This paper presents our Field Observatory Network (FiON) of researchers, farmers, companies, and other stakeholders developing carbon farming practices. FiON has established a unified methodology towards monitoring and forecasting agricultural carbon sequestration by combining offline and near-real-time field measurements, weather data, satellite imagery, modeling, and computing networks. FiON's first phase consists of two intensive research sites and 20 voluntary pilot farms testing carbon farming practices in Finland. To disseminate the data, FiON built a web-based dashboard called the Field Observatory (v1.0, https://www.fieldobservatory.org/, last access: 3 February 2022). The Field Observatory is designed as an online service for near-real-time model–data synthesis, forecasting, and decision support for the farmers who are able to monitor the effects of carbon farming practices. The most advanced features of the Field Observatory are visible on the Qvidja site, which acts as a prototype for the most recent implementations. Overall, FiON aims to create new knowledge on agricultural soil carbon sequestration and effects of carbon farming practices as well as provide an MRV tool for decision support.