Pedro Pablo Cardenas Alzate

Prof. Dr. Pedro Pablo Cardenas Alzate

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Research Focus & Metrics

Academic Career Length

29Years (1998-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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4 December 2000 in Physical Review Letters
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PAPedro Pablo Cardenas Alzate
Pedro Pablo Cardenas Alzate
FMF. Moreno-Herrero
F. Moreno-Herrero
JCJaime Colchero
Jaime Colchero
JGJulio Gómez-Herrero
Julio Gómez-Herrero
PHP. Herrero
P. Herrero
EAEmilio Artacho
Emilio Artacho
The electrical conductivity of biomaterials on a molecular scale is of fundamental interest in the life sciences. We perform first principles electronic structure calculations, which clearly indicate that λ-DNA chains should present large resistance values. We also present two direct procedures to measure electrical currents through DNA molecules adsorbed on mica. The lower limit for the resistivity is 106Ω̇cm, in agreement with our calculations. We also show that low energy electron bombardment induces a rapid contamination and dramatically affects the measured conductivity, thus providing an explanation to recent reports of high DNA conductivity.

19 June 2005 in Nature Materials
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CGC. Gómez-Navarro
C. Gómez-Navarro
PAPedro Pablo Cardenas Alzate
Pedro Pablo Cardenas Alzate
JGJulio Gómez-Herrero
Julio Gómez-Herrero
BBB. Biel
B. Biel
FGF. J. Garcia-Vidal
F. J. Garcia-Vidal
FFF. Flores
F. Flores

7 May 2004 in Proceedings of the National Academy of Sciences
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III. L. Ivanovska
I. L. Ivanovska
PAPedro Pablo Cardenas Alzate
Pedro Pablo Cardenas Alzate
BIBorja Ibarra
Borja Ibarra
GSG. Sgalari
G. Sgalari
FMF. C. MacKintosh
F. C. MacKintosh
GWG. J. L. Wuite
G. J. L. Wuite
The shell of bacteriophages protects the viral DNA during host-to-host transfer and serves as a high-pressure container storing energy for DNA injection into a host bacterium. Here, we probe the mechanical properties of nanometer-sized bacteriophage φ29 shells by applying point forces. We show that empty shells withstand nanonewton forces while being indented up to 30% of their height. The elastic response varies across the surface, reflecting the arrangement of shell proteins. The measured Young's modulus (≈1.8 GPa) is comparable with that of hard plastic. We also observe fatigue and breakage of capsids after probing them repetitively. These results illustrate the mechanoprotection that viral shells provide and also suggest design principles for nanotechnology.

12 September 2006 in Proceedings of the National Academy of Sciences
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Journal Article
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CCC. Carrasco
C. Carrasco
ACAura Carreira
Aura Carreira
ISI. A. T. Schaap
I. A. T. Schaap
PSP. A. Serena
P. A. Serena
JGJulio Gómez-Herrero
Julio Gómez-Herrero
PAPedro Pablo Cardenas Alzate
Pedro Pablo Cardenas Alzate
In this work, we provide evidence of a mechanism to reinforce the strength of an icosahedral virus by using its genomic DNA as a structural element. The mechanical properties of individual empty capsids and DNA-containing virions of the minute virus of mice are investigated by using atomic force microscopy. The stiffness of the empty capsid is found to be isotropic. Remarkably, the presence of the DNA inside the virion leads to an anisotropic reinforcement of the virus stiffness by ≈3%, 40%, and 140% along the fivefold, threefold, and twofold symmetry axes, respectively. A finite element model of the virus indicates that this anisotropic mechanical reinforcement is due to DNA stretches bound to 60 concavities of the capsid. These results, together with evidence of biologically relevant conformational rearrangements of the capsid around pores located at the fivefold symmetry axes, suggest that the bound DNA may reinforce the overall stiffness of the viral particle without canceling the conformational changes needed for its infectivity.

1 August 2006 in Biophysical Journal
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ISIwan A.T. Schaap
Iwan A.T. Schaap
CCCarolina Carrasco
Carolina Carrasco
PAPedro Pablo Cardenas Alzate
Pedro Pablo Cardenas Alzate
FMFrederick C. MacKintosh
Frederick C. MacKintosh
CSChristoph F. Schmidt
Christoph F. Schmidt

30 November 1998 in Applied Physics Letters
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PAPedro Pablo Cardenas Alzate
Pedro Pablo Cardenas Alzate
JCJ. Colchero
J. Colchero
JGJulio Gómez-Herrero
Julio Gómez-Herrero
ABA. M. Baró
A. M. Baró
In this letter, we present a new scanning probe microscopy mode, jumping mode, which allows the simultaneous measurement of the topography and of some other physical property of the sample. Essentially, at each image point first the topography of the sample is measured during a feedback phase of a cycle, and then the tip–sample interaction is evaluated in real time as the tip is moved away and towards the sample. Since the lateral motion is done out of contact the method is free, or nearly free, of shear forces. The general advantages of jumping mode are discussed. Finally, two different applications of this mode are presented. In addition to the topography, the first application measures the adhesion between the tip and the sample, while the second determines the corresponding electrostatic interaction.