Samina Abidi

Dr. Samina Abidi

Dalhousie University, Halifax, Canada

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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CSCarol Shofiya
Carol Shofiya
Samina AbidiSamina Abidi
Samina Abidi
Background: COVID-19 preventive measures have been an obstacle to millions of people around the world, influencing not only their normal day-to-day activities but also affecting their mental health. Social distancing is one such preventive measure. People express their opinions freely through social media platforms like Twitter, which can be shared among other users. The articulated texts from Twitter can be analyzed to find the sentiments of the public concerning social distancing. Objective: To understand and analyze public sentiments towards social distancing as articulated in Twitter textual data. Methods: Twitter data specific to Canada and texts comprising social distancing keywords were extrapolated, followed by utilizing the SentiStrength tool to extricate sentiment polarity of tweet texts. Thereafter, the support vector machine (SVM) algorithm was employed for sentiment classification. Evaluation of performance was measured with a confusion matrix, precision, recall, and F1 measure. Results: This study resulted in the extraction of a total of 629 tweet texts, of which, 40% of tweets exhibited neutral sentiments, followed by 35% of tweets showed negative sentiments and only 25% of tweets expressed positive sentiments towards social distancing. The SVM algorithm was applied by dissecting the dataset into 80% training and 20% testing data. Performance evaluation resulted in an accuracy of 71%. Upon using tweet texts with only positive and negative sentiment polarity, the accuracy increased to 81%. It was observed that reducing test data by 10% increased the accuracy to 87%. Conclusion: Results showed that an increase in training data increased the performance of the algorithm.

23 October 2019 in JMIR Medical Informatics
Verified
Journal Article
Open access
HMHani Nabeel Mufti
Hani Nabeel Mufti
GHGregory Marshal Hirsch
Gregory Marshal Hirsch
Samina AbidiSamina Abidi
Samina Abidi
SASyed Sibte Raza Abidi
Syed Sibte Raza Abidi
Background: Delirium is a temporary mental disorder that occasionally affects patients undergoing surgery, especially cardiac surgery. It is strongly associated with major adverse events, which in turn leads to increased cost and poor outcomes (eg, need for nursing home due to cognitive impairment, stroke, and death). The ability to foresee patients at risk of delirium will guide the timely initiation of multimodal preventive interventions, which will aid in reducing the burden and negative consequences associated with delirium. Several studies have focused on the prediction of delirium. However, the number of studies in cardiac surgical patients that have used machine learning methods is very limited. Objective: This study aimed to explore the application of several machine learning predictive models that can pre-emptively predict delirium in patients undergoing cardiac surgery and compare their performance. Methods: We investigated a number of machine learning methods to develop models that can predict delirium after cardiac surgery. A clinical dataset comprising over 5000 actual patients who underwent cardiac surgery in a single center was used to develop the models using logistic regression, artificial neural networks (ANN), support vector machines (SVM), Bayesian belief networks (BBN), naïve Bayesian, random forest, and decision trees. Results: Only 507 out of 5584 patients (11.4%) developed delirium. We addressed the underlying class imbalance, using random undersampling, in the training dataset. The final prediction performance was validated on a separate test dataset. Owing to the target class imbalance, several measures were used to evaluate algorithm’s performance for the delirium class on the test dataset. Out of the selected algorithms, the SVM algorithm had the best F1 score for positive cases, kappa, and positive predictive value (40.2%, 29.3%, and 29.7%, respectively) with a P=.01, .03, .02, respectively. The ANN had the best receiver-operator area-under the curve (78.2%; P=.03). The BBN had the best precision-recall area-under the curve for detecting positive cases (30.4%; P=.03). Conclusions: Although delirium is inherently complex, preventive measures to mitigate its negative effect can be applied proactively if patients at risk are prospectively identified. Our results highlight 2 important points: (1) addressing class imbalance on the training dataset will augment machine learning model’s performance in identifying patients likely to develop postoperative delirium, and (2) as the prediction of postoperative delirium is difficult because it is multifactorial and has complex pathophysiology, applying machine learning methods (complex or simple) may improve the prediction by revealing hidden patterns, which will lead to cost reduction by prevention of complications and will optimize patients’ outcomes.

25 July 2023 in BMC Health Services Research
Verified
Journal Article
Open access
PDF file
KEKyle Eastwood
Kyle Eastwood
RMRonald May
Ronald May
PAPantelis Andreou
Pantelis Andreou
Samina AbidiSamina Abidi
Samina Abidi
SASyed Sibte Raza Abidi
Syed Sibte Raza Abidi
OLOsama M. Loubani
Osama M. Loubani
Background: Artificial Intelligence (AI) is recognized by emergency physicians (EPs) as an important technology that will affect clinical practice. Several AI-tools have already been developed to aid care delivery in emergency medicine (EM). However, many EM tools appear to have been developed without a cross-disciplinary needs assessment, making it difficult to understand their broader importance to general-practice. Clinician surveys about AI tools have been conducted within other medical specialties to help guide future design. This study aims to understand the needs of Canadian EPs for the apt use of AI-based tools.Methods: A national cross-sectional, two-stage, mixed-method electronic survey of Canadian EPs was conducted from January-May 2022. The survey includes demographic and physician practice-pattern data, clinicians’ current use and perceptions of AI, and individual rankings of which EM work-activities most benefit from AI.Results: The primary outcome is a ranked list of high-priority AI-tools for EM that physicians want translated into general use within the next 10 years. When ranking specific AI examples, ‘automated charting/report generation’, ‘clinical prediction rules’ and ‘monitoring vitals with early-warning detection’ were the top items. When ranking by physician work-activities, ‘AI-tools for documentation’, ‘AI-tools for computer use’ and ‘AI-tools for triaging patients’ were the top items. For secondary outcomes, EPs indicated AI was ‘likely’ (43.1%) or ‘extremely likely’ (43.7%) to be able to complete the task of ‘documentation’ and indicated either ‘a-great-deal’ (32.8%) or ‘quite-a-bit’ (39.7%) of potential for AI in EM. Further, EPs were either ‘strongly’ (48.5%) or ‘somewhat’ (39.8%) interested in AI for EM.Conclusions: Physician input on the design of AI is essential to ensure the uptake of this technology. Translation of AI-tools to facilitate documentation is considered a high-priority, and respondents had high confidence that AI could facilitate this task. This study will guide future directions regarding the use of AI for EM and help direct efforts to address prevailing technology-translation barriers such as access to high-quality application-specific data and developing reporting guidelines for specific AI-applications. With a prioritized list of high-need AI applications, decision-makers can develop focused strategies to address these larger obstacles.


1 August 2020 in Artificial Intelligence in Medicine
Verified
Journal Article
Closed access
William Van WoenselWilliam Van Woensel
William Van Woensel
PRPatrice C. Roy
Patrice C. Roy
SASyed Sibte Raza Abidi
Syed Sibte Raza Abidi
Samina AbidiSamina Abidi
Samina Abidi

18 April 2018 in JMIR Medical Informatics
Verified
Journal Article
Open access
Samina AbidiSamina Abidi
Samina Abidi
MVMichael Vallis
Michael Vallis
HPHelena Piccinini-Vallis
Helena Piccinini-Vallis
SISyed Ali Imran
Syed Ali Imran
SASyed Sibte Raza Abidi
Syed Sibte Raza Abidi
Clinical informatics, decision support for health professionals, electronic health records, and ehealth infrastructures.