David Nielsen

Prof. David Nielsen

Chemical Engineering, School for Engineering of Matter, Transport and Energy, Arizona State University, Phoenix, AZ, USA
orcid

Research Focus & Metrics

Academic Career Length

30Years (1997-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
1 August 2020 in Current Opinion in Biotechnology
Verified
Journal Article
Closed access
ASAditya Sarnaik
Aditya Sarnaik
ALArren Liu
Arren Liu
David NielsenDavid Nielsen
David Nielsen
AVArul M Varman
Arul M Varman

7 January 2013 in Biotechnology and Bioengineering
Verified
Journal Article
Closed access
PDF file
JAJake Adkins
Jake Adkins
JJJustin Jordan
Justin Jordan
David NielsenDavid Nielsen
David Nielsen

1 January 2012 in Frontiers in Microbiology
Verified
Journal Article
Open access
PDF file
JAJake Adkins
Jake Adkins
SPShawn Pugh
Shawn Pugh
RMRebekah McKenna
Rebekah McKenna
David NielsenDavid Nielsen
David Nielsen
By applying metabolic engineering tools and strategies to engineer synthetic enzyme pathways, the number and diversity of commodity and specialty chemicals that can be derived directly from renewable feedstocks is rapidly and continually expanding. This of course includes a number of monomer building-block chemicals that can be used to produce replacements to many conventional plastic materials. This review aims to highlight numerous recent and important advancements in the microbial production of these so-called “biomonomers.” Relative to naturally-occurring renewable bioplastics, biomonomers offer several important advantages, including improved control over the final polymer structure and purity, the ability to synthesize non-natural copolymers, and allowing products to be excreted from cells which ultimately streamlines downstream recovery and purification. To highlight these features, a handful of biomonomers have been selected as illustrative examples of recent works, including polyamide monomers, styrenic vinyls, hydroxyacids, and diols. Where appropriate, examples of their industrial penetration to date and end-product uses are also highlighted. Novel biomonomers such as these are ultimately paving the way toward new classes of renewable bioplastics that possess a broader diversity of properties than ever before possible.

1 December 2015 in Metabolic Engineering Communications
Verified
Journal Article
Open access
SPShawn Pugh
Shawn Pugh
RMRebekah McKenna
Rebekah McKenna
IHIbrahim Halloum
Ibrahim Halloum
David NielsenDavid Nielsen
David Nielsen
Benzyl alcohol is an aromatic hydrocarbon used as a solvent and an intermediate chemical in the pharmaceutical, cosmetics, and flavor/fragrance industries. The de novo biosynthesis of benzyl alcohol directly from renewable glucose was herein explored using a non-natural pathway engineered in Escherichia coli. Benzaldehyde was first produced from endogenous phenylpyruvate via three heterologous steps, including hydroxymandelate synthase (encoded by hmaS) from Amycolatopsis orientalis, followed by (S)-mandelate dehydrogenase (encoded by mdlB) and phenylglyoxylate decarboxylase (encoded by mdlC) from Pseudomonas putida ATCC 12633. The subsequent rapid and efficient reduction of benzaldehyde to benzyl alcohol occurred by the combined activity and native regulation of multiple endogenous alcohol dehydrogenases and/or aldo-keto reductases. Through systematic deletion of competing aromatic amino acid biosynthesis pathways to promote endogenous phenylpyruvate availability, final benzyl alcohol titers as high as 114±1 mg/L were realized, representing a yield of 7.6±0.1 mg/g on glucose and a ~5-fold improvement over initial strains

21 August 2014 in Microbial Cell Factories
Verified
Journal Article
Open access
PDF file
RMRebekah McKenna
Rebekah McKenna
BTBrian Thompson
Brian Thompson
SPShawn Pugh
Shawn Pugh
David NielsenDavid Nielsen
David Nielsen
Styrene is an important building-block petrochemical and monomer used to produce numerous plastics. Whereas styrene bioproduction by Escherichia coli was previously reported, the long-term potential of this approach will ultimately rely on the use of hosts with improved industrial phenotypes, such as the yeast Saccharomyces cerevisiae. Classical metabolic evolution was first applied to isolate a mutant capable of phenylalanine over-production to 357 mg/L. Transcription analysis revealed up-regulation of several phenylalanine biosynthesis pathway genes including ARO3, encoding the bottleneck enzyme DAHP synthase. To catalyze the first pathway step, phenylalanine ammonia lyase encoded by PAL2 from A. thaliana was constitutively expressed from a high copy plasmid. The final pathway step, phenylacrylate decarboxylase, was catalyzed by the native FDC1. Expression of FDC1 was naturally induced by trans-cinnamate, the pathway intermediate and its substrate, at levels sufficient for ensuring flux through the pathway. Deletion of ARO10 to eliminate the competing Ehrlich pathway and expression of a feedback-resistant DAHP synthase encoded by ARO4 K229L preserved and promoted the endogenous availability precursor phenylalanine, leading to improved pathway flux and styrene production. These systematic improvements allowed styrene titers to ultimately reach 29 mg/L at a glucose yield of 1.44 mg/g, a 60% improvement over the initial strain. The potential of S. cerevisiae as a host for renewable styrene production has been demonstrated. Significant strain improvements, however, will ultimately be needed to achieve economical production levels.

20 November 2013 in Biotechnology Progress
Verified
Journal Article
Closed access
PDF file
MWMichael Wiehn
Michael Wiehn
KSKyle Staggs
Kyle Staggs
YWYuchen Wang
Yuchen Wang
David NielsenDavid Nielsen
David Nielsen