Anil Anthony Bharath

Prof. Dr. Anil Anthony Bharath

Department of Bioengineering, Faculty of Engineering, Imperial College London, London, UK

Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 January 2018 in IEEE Signal Processing Magazine
Verified
Journal Article
Open access
ACAntonia Creswell
Antonia Creswell
TWTom White
Tom White
VDVincent Dumoulin
Vincent Dumoulin
KAKai Arulkumaran
Kai Arulkumaran
BSBiswa Sengupta
Biswa Sengupta
Anil Anthony BharathAnil Anthony Bharath
Anil Anthony Bharath
Generative adversarial networks (GANs) provide a way to learn deep representations without extensively annotated training data. They achieve this by deriving backpropagation signals through a competitive process involving a pair of networks. The representations that can be learned by GANs may be used in a variety of applications, including image synthesis, semantic image editing, style transfer, image superresolution, and classification. The aim of this review article is to provide an overview of GANs for the signal processing community, drawing on familiar analogies and concepts where possible. In addition to identifying different methods for training and constructing GANs, we also point to remaining challenges in their theory and application.

2 November 2018 in IEEE Transactions on Neural Networks and Learning Systems
Verified
Journal Article
Open access
ACAntonia Creswell
Antonia Creswell
Anil Anthony BharathAnil Anthony Bharath
Anil Anthony Bharath
Generative adversarial networks (GANs) learn a deep generative model that is able to synthesize novel, high-dimensional data samples. New data samples are synthesized by passing latent samples, drawn from a chosen prior distribution, through the generative model. Once trained, the latent space exhibits interesting properties that may be useful for downstream tasks such as classification or retrieval. Unfortunately, GANs do not offer an ``inverse model,'' a mapping from data space back to latent space, making it difficult to infer a latent representation for a given data sample. In this paper, we introduce a technique, inversion, to project data samples, specifically images, to the latent space using a pretrained GAN. Using our proposed inversion technique, we are able to identify which attributes of a data set a trained GAN is able to model and quantify GAN performance, based on a reconstruction loss. We demonstrate how our proposed inversion technique may be used to quantitatively compare the performance of various GAN models trained on three image data sets. We provide codes for all of our experiments in the website (https://github.com/ToniCreswell/InvertingGAN).

1 August 2022 in Physics of Fluids
Verified
Journal Article
Open access
PDF file
MLMario Lino
Mario Lino
SFStathi Fotiadis
Stathi Fotiadis
Anil Anthony BharathAnil Anthony Bharath
Anil Anthony Bharath
CCChris Cantwell
Chris Cantwell
The simulation of fluid dynamics, typically by numerically solving partial differential equations, is an essential tool in many areas of science and engineering. However, the high computational cost can limit application in practice and may prohibit exploring large parameter spaces. Recent deep-learning approaches have demonstrated the potential to yield surrogate models for the simulation of fluid dynamics. While such models exhibit lower accuracy in comparison, their low runtime makes them appealing for design-space exploration. We introduce two novel graph neural network (GNN) models, multi-scale (MuS)-GNN and rotation-equivariant (RE) MuS-GNN, for extrapolating the time evolution of the fluid flow. In both models, previous states are processed through multiple coarsening of the graph, which enables faster information propagation through the network and improves the capture and forecast of the system state, particularly in problems encompassing phenomena spanning a range of length scales. Additionally, REMuS-GNN is architecturally equivariant to rotations, which allows the network to learn the underlying physics more efficiently, leading to improved accuracy and generalization. We analyze these models using two canonical fluid models: advection and incompressible fluid dynamics. Our results show that the proposed GNN models can generalize from uniform advection fields to high-gradient fields on complex domains. The multi-scale graph architecture allows for inference of incompressible Navier–Stokes solutions, within a range of Reynolds numbers and design parameters, more effectively than a baseline single-scale GNN. Simulations obtained with MuS-GNN and REMuS-GNN are between two and four orders of magnitude faster than the numerical solutions on which they were trained.

16 August 2018 in IEEE Transactions on Neural Networks and Learning Systems
Verified
Journal Article
Open access
ACAntonia Creswell
Antonia Creswell
Anil Anthony BharathAnil Anthony Bharath
Anil Anthony Bharath
Unsupervised learning is of growing interest because it unlocks the potential held in vast amounts of unlabeled data to learn useful representations for inference. Autoencoders, a form of generative model, may be trained by learning to reconstruct unlabeled input data from a latent representation space. More robust representations may be produced by an autoencoder if it learns to recover clean input samples from corrupted ones. Representations may be further improved by introducing regularization during training to shape the distribution of the encoded data in the latent space. We suggest denoising adversarial autoencoders (AAEs), which combine denoising and regularization, shaping the distribution of latent space using adversarial training. We introduce a novel analysis that shows how denoising may be incorporated into the training and sampling of AAEs. Experiments are performed to assess the contributions that denoising makes to the learning of representations for classification and sample synthesis. Our results suggest that autoencoders trained using a denoising criterion achieve higher classification performance and can synthesize samples that are more consistent with the input data than those trained without a corruption process.

6 July 2022 in Communications Medicine
Verified
Journal Article
Open access
PDF file
NWNathan C. K. Wong
Nathan C. K. Wong
SMSepehr Meshkinfamfard
Sepehr Meshkinfamfard
VTValérian Turbé
Valérian Turbé
MWMatthew Whitaker
Matthew Whitaker
MMMaya Moshe
Maya Moshe
Anil Anthony BharathAnil Anthony Bharath
Anil Anthony Bharath
Background: Lateral flow immunoassays (LFIAs) are being used worldwide for COVID-19 mass testing and antibody prevalence studies. Relatively simple to use and low cost, these tests can be self-administered at home, but rely on subjective interpretation of a test line by eye, risking false positives and false negatives. Here, we report on the development of ALFA (Automated Lateral Flow Analysis) to improve reported sensitivity and specificity. Methods: Our computational pipeline uses machine learning, computer vision techniques and signal processing algorithms to analyse images of the Fortress LFIA SARS-CoV-2 antibody self-test, and subsequently classify results as invalid, IgG negative and IgG positive. A large image library of 595,339 participant-submitted test photographs was created as part of the REACT-2 community SARS-CoV-2 antibody prevalence study in England, UK. Alongside ALFA, we developed an analysis toolkit which could also detect device blood leakage issues. Results: Automated analysis showed substantial agreement with human experts (Cohen’s kappa 0.90–0.97) and performed consistently better than study participants, particularly for weak positive IgG results. Specificity (98.7–99.4%) and sensitivity (90.1–97.1%) were high compared with visual interpretation by human experts (ranges due to the varying prevalence of weak positive IgG tests in datasets). Conclusions: Given the potential for LFIAs to be used at scale in the COVID-19 response (for both antibody and antigen testing), even a small improvement in the accuracy of the algorithms could impact the lives of millions of people by reducing the risk of false-positive and false-negative result read-outs by members of the public. Our findings support the use of machine learning-enabled automated reading of at-home antibody lateral flow tests as a tool for improved accuracy for population-level community surveillance.

4 October 2021 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
FUFatmatulzehra Uslu
Fatmatulzehra Uslu
MVMarta Varela
Marta Varela
GBGeorgia Boniface
Georgia Boniface
TMThakshayene Mahenthran
Thakshayene Mahenthran
HCHenry Chubb
Henry Chubb
Anil Anthony BharathAnil Anthony Bharath
Anil Anthony Bharath
Although atrial fibrillation (AF) is the most common sustained atrial arrhythmia, treatment success for this condition remains suboptimal. Information from magnetic resonance imaging (MRI) has the potential to improve treatment efficacy, but there are currently few automatic tools for the segmentation of the atria in MR images. In the study, we propose a LA-Net, a multi-task network optimised to simultaneously generate left atrial segmentation and edge masks from MRI. LA-Net includes cross attention modules (CAMs) and enhanced decoder modules (EDMs) to purposefully select the most meaningful edge information for segmentation and smoothly incorporate it into segmentation masks at multiple-scales. We evaluate the performance of LA-Net on two MR sequences: late gadolinium enhanced (LGE) atrial MRI and atrial short axis balanced steady state free precession (bSSFP) MRI. LA-Net gives Hausdorff distances of 12.43 mm and Dice scores of 0.92 on the LGE (STACOM 2018) dataset and Hausdorff distances of 17.41 mm and Dice scores of 0.90 on the bSSFP (in-house) dataset without any post-processing, surpassing previously proposed segmentation networks, including U-Net and SEGANet. Our method allows automatic extraction of information about the LA from MR images, which can play an important role in the management of AF patients.