Chimeric antigen receptor (CAR) T-cell therapy has shown promise in the treatment of haematological cancers and is currently being investigated for solid tumours, including high-grade glioma brain tumours. There is a desperate need to quantitatively study the factors that contribute to the efficacy of CAR T-cell therapy in solid tumours. In this work, we use a mathematical model of predator–prey dynamics to explore the kinetics of CAR T-cell killing in glioma: the Chimeric Antigen Receptor T-cell treatment Response in GliOma (CARRGO) model. The model includes rates of cancer cell proliferation, CAR T-cell killing, proliferation, exhaustion, and persistence. We use patient-derived and engineered cancer cell lines with an in vitro real-time cell analyser to parametrize the CARRGO model. We observe that CAR T-cell dose correlates inversely with the killing rate and correlates directly with the net rate of proliferation and exhaustion. This suggests that at a lower dose of CAR T-cells, individual T-cells kill more cancer cells but become more exhausted when compared with higher doses. Furthermore, the exhaustion rate was observed to increase significantly with tumour growth rate and was dependent on level of antigen expression. The CARRGO model highlights nonlinear dynamics involved in CAR T-cell therapy and provides novel insights into the kinetics of CAR T-cell killing. The model suggests that CAR T-cell treatment may be tailored to individual tumour characteristics including tumour growth rate and antigen level to maximize therapeutic benefit.
16 November 2011 in Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences
By using functional integral methods, we determine a computable evolution equation for the joint response-excitation probability density function of a stochastic dynamical system driven by coloured noise. This equation can be represented in terms of a superimposition of differential constraints, i.e. partial differential equations involving unusual limit partial derivatives, the first one of which was originally proposed by Sapsis & Athanassoulis. A connection with the classical response approach is established in the general case of random noise with arbitrary correlation time, yielding a fully consistent new theory for non-Markovian systems. We also address the question of computability of the joint response-excitation probability density function as a solution to a boundary value problem involving only one differential constraint. By means of a simple analytical example, it is shown that, in general, such a problem is undetermined, in the sense that it admits an infinite number of solutions. This issue can be overcome by completing the system with additional relations yielding a closure problem, which is similar to the one arising in the standard response theory. Numerical verification of the equations for the joint response-excitation density is obtained for a tumour cell growth model under immune response.
1 January 2016 in Journal of Computational Physics
We study the statistical properties of random shock waves in stochastic Burgers equation subject to random space–time perturbations and random initial conditions. By using the response–excitation probability density function (PDF) method and the Mori–Zwanzig (MZ) formulation of irreversible statistical mechanics, we derive exact reduced-order equations for the one-point and two-point PDFs of the solution field. In particular, we compute the statistical properties of random shock waves in the inviscid limit by using an adaptive (shock-capturing) discontinuous Galerkin method in both physical and probability spaces. We consider stochastic flows generated by high-dimensional random initial conditions and random additive forcing terms, yielding multiple interacting shock waves collapsing into clusters and settling down to a similarity state. We also address the question of how random shock waves in space and time manifest themselves in probability space. The proposed new mathematical framework can be applied to different conservation laws, potentially leading to new insights into high-dimensional stochastic dynamical systems and more efficient computational algorithms.