Understanding the relationship between land use and surface water quality is necessary for effective water management. We estimated the impacts of catchment-wide land use on water quality during the dry and rainy seasons in the Dongjiang River basin, using remote sensing, geographic information systems and multivariate statistical techniques. The results showed that the 83 sites can be divided into three groups representing different land use types: forest, agriculture and urban. Water quality parameters exhibited significant variations between the urban-dominated and forest-dominated sites. The proportion of forested land was positively associated with dissolved oxygen concentration but negatively associated with water temperature, electrical conductivity, permanganate index, total phosphorus, total nitrogen, ammonia nitrogen, nitrate nitrogen and chlorophyll-a. The proportion of urban land was strongly positively associated with total nitrogen and ammonia nitrogen concentrations. Forested and urban land use had stronger impacts on water quality in the dry season than in the rainy season. However, agricultural land use did not have a significant impact on water quality. Our study indicates that urban land use was the key factor affecting water quality change, and limiting point-source waste discharge in urban areas during the dry season would be critical for improving water quality in the study area.