Claire Chalopin

Dr. Claire Chalopin

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Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 September 2021 in Diagnostics
Verified
Journal Article
Open access
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TCToby Collins
Toby Collins
MMMarianne Maktabi
Marianne Maktabi
Manuel BarberioManuel Barberio
Manuel Barberio
VBValentin Bencteux
Valentin Bencteux
Boris Jansen-WinkelnBoris Jansen-Winkeln
Boris Jansen-Winkeln
Ines GockelInes Gockel
Ines Gockel
There are approximately 1.8 million diagnoses of colorectal cancer, 1 million diagnoses of stomach cancer, and 0.6 million diagnoses of esophageal cancer each year globally. An automatic computer-assisted diagnostic (CAD) tool to rapidly detect colorectal and esophagogastric cancer tissue in optical images would be hugely valuable to a surgeon during an intervention. Based on a colon dataset with 12 patients and an esophagogastric dataset of 10 patients, several state-of-the-art machine learning methods have been trained to detect cancer tissue using hyperspectral imaging (HSI), including Support Vector Machines (SVM) with radial basis function kernels, Multi-Layer Perceptrons (MLP) and 3D Convolutional Neural Networks (3DCNN). A leave-one-patient-out cross-validation (LOPOCV) with and without combining these sets was performed. The ROC-AUC score of the 3DCNN was slightly higher than the MLP and SVM with a difference of 0.04 AUC. The best performance was achieved with the 3DCNN for colon cancer and esophagogastric cancer detection with a high ROC-AUC of 0.93. The 3DCNN also achieved the best DICE scores of 0.49 and 0.41 on the colon and esophagogastric datasets, respectively. These scores were significantly improved using a patient-specific decision threshold to 0.58 and 0.51, respectively. This indicates that, in practical use, an HSI-based CAD system using an interactive decision threshold is likely to be valuable. Experiments were also performed to measure the benefits of combining the colorectal and esophagogastric datasets (22 patients), and this yielded significantly better results with the MLP and SVM models.

25 February 2021 in Cancers
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Journal Article
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Boris Jansen-WinkelnBoris Jansen-Winkeln
Boris Jansen-Winkeln
Manuel BarberioManuel Barberio
Manuel Barberio
CCClaire Chalopin
Claire Chalopin
KSKatrin Schierle
Katrin Schierle
Michele DianaMichele Diana
Michele Diana
MMMarianne Maktabi
Marianne Maktabi
Currently, colorectal cancer (CRC) is mainly identified via a visual assessment during colonoscopy, increasingly used artificial intelligence algorithms, or surgery. Subsequently, CRC is confirmed through a histopathological examination by a pathologist. Hyperspectral imaging (HSI), a non-invasive optical imaging technology, has shown promising results in the medical field. In the current study, we combined HSI with several artificial intelligence algorithms to discriminate CRC. Between July 2019 and May 2020, 54 consecutive patients undergoing colorectal resections for CRC were included. The tumor was imaged from the mucosal side with a hyperspectral camera. The image annotations were classified into three groups (cancer, CA; adenomatous margin around the central tumor, AD; and healthy mucosa, HM). Classification and visualization were performed based on a four-layer perceptron neural network. Based on a neural network, the classification of CA or AD resulted in a sensitivity of 86% and a specificity of 95%, by means of leave-one-patient-out cross-validation. Additionally, significant differences in terms of perfusion parameters (e.g., oxygen saturation) related to tumor staging and neoadjuvant therapy were observed. Hyperspectral imaging combined with automatic classification can be used to differentiate between CRC and healthy mucosa. Additionally, the biological changes induced by chemotherapy to the tissue are detectable with HSI.

1 September 2016 in Expert Systems with Applications
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Journal Article
Closed access
EMElisee Ilunga Mbuyamba
Elisee Ilunga Mbuyamba
Jorge Mario Cruz-DuarteJorge Mario Cruz-Duarte
Jorge Mario Cruz-Duarte
Juan Gabriel Avina-CervantesJuan Gabriel Avina-Cervantes
Juan Gabriel Avina-Cervantes
CCCarlos Rodrigo Correa-Cely
Carlos Rodrigo Correa-Cely
DLDirk Lindner
Dirk Lindner
CCClaire Chalopin
Claire Chalopin

28 August 2020 in Journal of Biomedical Optics
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Journal Article
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HKHannes Köhler
Hannes Köhler
AKAxel Kulcke
Axel Kulcke
MMMarianne Maktabi
Marianne Maktabi
YMYusef Moulla
Yusef Moulla
Boris Jansen-WinkelnBoris Jansen-Winkeln
Boris Jansen-Winkeln
CCClaire Chalopin
Claire Chalopin
Hyperspectral imaging (HSI) has been used in many fields of biomedical research and clinical applications in recent years.1 Promising results were reported for the estimation of organ perfusion,2,3 differentiation of anatomical structures,4,5 wound assessment,6,7 and the detection of cancerous tissue8 – 11 in animal experiments and clinical studies.12 However, the majority of the described systems do not apply to current minimally invasive surgery. Supporting the estimation of tissue perfusion or detection of risk structures with spectral imaging would be particularly important in laparoscopic procedures where surgeons are limited to their visual impression.

1 December 2017 in Computers in Biology and Medicine
Verified
Journal Article
Open access
EMElisee Ilunga Mbuyamba
Elisee Ilunga Mbuyamba
Juan Gabriel Avina-CervantesJuan Gabriel Avina-Cervantes
Juan Gabriel Avina-Cervantes
JCJonathan Cepeda-Negrete
Jonathan Cepeda-Negrete
MIMario Alberto Ibarra-Manzano
Mario Alberto Ibarra-Manzano
CCClaire Chalopin
Claire Chalopin
Brain tumor segmentation is a routine process in a clinical setting and provides useful information for diagnosis and treatment planning. Manual segmentation, performed by physicians or radiologists, is a time-consuming task due to the large quantity of medical data generated presently. Hence, automatic segmentation methods are needed, and several approaches have been introduced in recent years including the Localized Region-based Active Contour Model (LRACM). There are many popular LRACM, but each of them presents strong and weak points. In this paper, the automatic selection of LRACM based on image content and its application on brain tumor segmentation is presented. Thereby, a framework to select one of three LRACM, i.e., Local Gaussian Distribution Fitting (LGDF), localized Chan-Vese (C-V) and Localized Active Contour Model with Background Intensity Compensation (LACM-BIC), is proposed. Twelve visual features are extracted to properly select the method that may process a given input image. The system is based on a supervised approach. Applied specifically to Magnetic Resonance Imaging (MRI) images, the experiments showed that the proposed system is able to correctly select the suitable LRACM to handle a specific image. Consequently, the selection framework achieves better accuracy performance than the three LRACM separately.

25 December 2021 in Cancers
Verified
Journal Article
Open access
PDF file
SHSebastian Hennig
Sebastian Hennig
Boris Jansen-WinkelnBoris Jansen-Winkeln
Boris Jansen-Winkeln
HKHannes Köhler
Hannes Köhler
LKLuise Knospe
Luise Knospe
CCClaire Chalopin
Claire Chalopin
YMYusef Moulla
Yusef Moulla
Background: Novel intraoperative imaging techniques, namely, hyperspectral (HSI) and fluorescence imaging (FI), are promising with respect to reducing severe postoperative complications, thus increasing patient safety. Both tools have already been used to evaluate perfusion of the gastric conduit after esophagectomy and before anastomosis. To our knowledge, this is the first study evaluating both modalities simultaneously during esophagectomy. Methods: In our pilot study, 13 patients, who underwent Ivor Lewis esophagectomy and gastric conduit reconstruction, were analyzed prospectively. HSI and FI were recorded before establishing the anastomosis in order to determine its optimum position. Results: No anastomotic leak occurred during this pilot study. In five patients, the imaging methods resulted in a more peripheral adaptation of the anastomosis. There were no significant differences between the two imaging tools, and no adverse events due to the imaging methods or indocyanine green (ICG) injection occurred. Conclusions: Simultaneous intraoperative application of both modalities was feasible and not time consuming. They are complementary with regard to the ideal anastomotic position and may contribute to better surgical outcomes. The impact of their simultaneous application will be proven in consecutive prospective trials with a large patient cohort.