Konstantin Ponomarev

Mr. Konstantin Ponomarev

orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
1 May 2021 in Pharmaceuticals
Verified
Journal Article
Open access
PDF file
KKKseniya Kovaleva
Kseniya Kovaleva
Olga I. YarovayaOlga I. Yarovaya
Olga I. Yarovaya
KPKonstantin Ponomarev
Konstantin Ponomarev
SCSergey Cheresiz
Sergey Cheresiz
AAAMIRHOSSEIN AZIMIRAD
AMIRHOSSEIN AZIMIRAD
NSNariman F. Salakhutdinov
Nariman F. Salakhutdinov
In this paper, a series of novel abietyl and dehydroabietyl ureas, thioureas, amides, and thioamides bearing adamantane moieties were designed, synthesized, and evaluated for their inhibitory activities against tyrosil-DNA-phosphodiesterase 1 (TDP1). The synthesized compounds were able to inhibit TDP1 at micromolar concentrations (0.19–2.3 µM) and demonstrated low cytotoxicity in the T98G glioma cell line. The effect of the terpene fragment, the linker structure, and the adamantane residue on the biological properties of the new compounds was investigated. Based on molecular docking results, we suppose that adamantane derivatives of resin acids bind to the TDP1 covalent intermediate, forming a hydrogen bond with Ser463 and hydrophobic contacts with the Phe259 and Trp590 residues and the oligonucleotide fragment of the substrate.

13 December 2021 in Molecules
Verified
Journal Article
Open access
PDF file
ESEvgenii Suslov
Evgenii Suslov
KPKonstantin Ponomarev
Konstantin Ponomarev
OPOksana Patrusheva
Oksana Patrusheva
SKSergey Kuranov
Sergey Kuranov
AOAlina Okhina
Alina Okhina
NSNariman F. Salakhutdinov
Nariman F. Salakhutdinov
A number of new chiral bispidines containing monoterpenoid fragments have been obtained. The bispidines were studied as ligands for Ni-catalyzed addition of diethylzinc to chalcones. The conditions for chromatographic analysis by HPLC-UV were developed, in which the peaks of the enantiomers of all synthesized chiral products were separated, which made it possible to determine the enantiomeric excess of the resulting mixture. It was demonstrated that bispidine-monoterpenoid conjugates can be used as the ligands for diethylzinc addition to chalcone C=C double bond but not as inducers of chirality. Besides products of ethylation, formation of products of formal hydrogenation of the chalcone C=C double bond was observed in all cases. Note, that this formation of hydrogenation products in significant amounts in the presence of such catalytic systems was found for the first time. A tentative scheme explaining the formation of all products was proposed.

10 January 2022 in Molecules
Verified
Journal Article
Open access
PDF file
DKDmitry P. Krut’ko
Dmitry P. Krut’ko
AMAleksei V. Medved’ko
Aleksei V. Medved’ko
KLKonstantin Lyssenko
Konstantin Lyssenko
Churakov AndreiChurakov Andrei
Churakov Andrei
ADAlexander Dalinger
Alexander Dalinger
SVSergey Vatsadze
Sergey Vatsadze
In this work, the solution conformations of seventeen 3,7-diacyl bispidines were studied by means of NMR spectroscopy including VT NMR experiments. The acyl groups included alkyl, alkenyl, aryl, hetaryl, and ferrocene moieties. The presence of syn/anti-isomers and their ratios were estimated, and some reasons explaining experimental facts were formulated. In particular, all aliphatic and heterocyclic units in the acylic R(CO) fragments led to an increased content of the syn-form in DMSO-d6 solutions. In contrast, only the anti-form was detected in DMSO-d6 and CDCl3 in the case when R = Ph, ferrocenyl, (R)-myrtenyl. In the case of a chiral compound derived from the natural terpene myrtene, a new dynamic process was found in addition to the expected inversion around the amide N-C(O) bond. Here, rotation around the CO-C=C bond in the acylic R fragment was detected, and its energy was estimated. For this compound, ΔG for amide N-C(O) inversion was found to be equal to 15.0 ± 0.2 kcal/mol, and for the rotation around the N(CO)–C2′ bond, it was equal to 15.6 ± 0.3 kcal/mol. NMR analysis of the chiral bispidine-based bis-amide was conducted for the first time. Two X-ray structures are reported. For the first time, the unique syn-form was found in the crystal of an acyclic bispidine-based bis-amide. Quantum chemical calculations revealed the unexpected mechanism for amide bond inversion. It was found that the reaction does not proceed as direct N-C(O) bond inversion in the double-chair (CC) conformation but rather requires the conformational transformation into the chair–boat (CB) form first. The amide bond inversion in the latter requires less energy than in the CC form.

5 May 2025 in Medicinal Chemistry Research
Verified
Journal Article
Closed access
PDF file
AKAnastasiia Kotliarova
Anastasiia Kotliarova
KPKonstantin Ponomarev
Konstantin Ponomarev
EMEkaterina A. Morozova
Ekaterina A. Morozova
ESEvgenii Suslov
Evgenii Suslov
APAlla V. Pavlova
Alla V. Pavlova
NSNariman F. Salakhutdinov
Nariman F. Salakhutdinov

1 December 2023 in Russian Journal of General Chemistry
Verified
Journal Article
Closed access
PDF file
EMEvgenii Mozhaitsev
Evgenii Mozhaitsev
AMA. V. Marakulin
A. V. Marakulin
ESEvgenii Suslov
Evgenii Suslov
KPKonstantin Ponomarev
Konstantin Ponomarev
KVK. P. Volcho
K. P. Volcho
NSN. F. Salakhutdinov
N. F. Salakhutdinov
A series of new (thio)semicarbazones containing adamantane and 3,7-dimethyloctyl fragments was synthesized. The configuration of imine bond was proposed based on the characteristic signals of 1Н and 13С NMR spectra simulated by quantum-chemical calculations.

Verified
Journal Article
Open access
PDF file
Stela DragomanovaStela Dragomanova
Stela Dragomanova
PPPolina Petkova-Kirova
Polina Petkova-Kirova
Konstantin VolchoKonstantin Volcho
Konstantin Volcho
Johannes ReynissonJohannes Reynisson
Johannes Reynisson
VGValya Grigorova
Valya Grigorova
LTLyubka Tancheva
Lyubka Tancheva
Neurodegenerative diseases, including Alzheimer’s disease, are marked by cholinergic dysfunction, oxidative stress, and reduced neurotrophic support, which drives the quest for multifunctional therapeutic agents. This pilot study presents four novel monoterpene–aminoadamantane conjugates (MACs 1–4) designed to combine the antioxidant and neuromodulatory characteristics of monoterpenes with the neuroprotective properties of aminoadamantane derivatives. Their physicochemical characteristics, blood–brain barrier permeability, and binding affinity to human acetylcholinesterase (AChE) were evaluated using molecular docking and in silico descriptor analysis. In vivo, the neuroprotective efficacy of the MACs was investigated in a scopolamine-induced dementia model in rats, employing behavioral tests. Biochemical assays conducted in the hippocampus and prefrontal cortex assessed AChE activity, antioxidant enzyme performance, lipid peroxidation levels, total glutathione content, and BDNF concentrations. The findings indicate that MAC1, MAC3, and MAC4 demonstrate favorable calculated blood–brain barrier permeability, strong predicted affinity for AChE, and significant in vivo alleviation of scopolamine-induced memory deficits, in conjunction with improvement of key markers of oxidative stress and cholinergic function. These results show that the structural hybridization of myrtenal with aminoadamantane frameworks produces promising multifunctional ligands that are relevant for Alzheimer’s-type neurodegeneration.