Seigo Shima

Dr. Seigo Shima


Research Focus & Metrics

Academic Career Length

25Years (2002-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 July 2008 in Science
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SSSeigo Shima
Seigo Shima
OPOliver Pilak
Oliver Pilak
SVSonja Vogt
Sonja Vogt
MSMichael Schick
Michael Schick
MSMarco S. Stagni
Marco S. Stagni
UEUlrich Ermler
Ulrich Ermler
Biological formation and consumption of molecular hydrogen (H 2 ) are catalyzed by hydrogenases, of which three phylogenetically unrelated types are known: [NiFe]-hydrogenases, [FeFe]-hydrogenases, and [Fe]-hydrogenase. We present a crystal structure of [Fe]-hydrogenase at 1.75 angstrom resolution, showing a mononuclear iron coordinated by the sulfur of cysteine 176, two carbon monoxide (CO) molecules, and the sp 2 -hybridized nitrogen of a 2-pyridinol compound with back-bonding properties similar to those of cyanide. The three-dimensional arrangement of the ligands is similar to that of thiolate, CO, and cyanide ligated to the low-spin iron in binuclear [NiFe]- and [FeFe]-hydrogenases, although the enzymes have evolved independently and the CO and cyanide ligands are not found in any other metalloenzyme. The related iron ligation pattern of hydrogenases exemplifies convergent evolution and presumably plays an essential role in H 2 activation. This finding may stimulate the ongoing synthesis of catalysts that could substitute for platinum in applications such as fuel cells.

1 January 2007 in The Chemical Record
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SSSeigo Shima
Seigo Shima
RTRudolf K. Thauer
Rudolf K. Thauer

18 August 2017 in Science
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TWTristan Wagner
Tristan Wagner
JKJürgen Koch
Jürgen Koch
UEUlrich Ermler
Ulrich Ermler
SSSeigo Shima
Seigo Shima
Methanogenic archaea metabolism: Most of the methane on Earth is produced by the metabolism of methanogenic archaea. The final step involves a reaction between methyl-coenzyme M and coenzyme B to give CoM-S-S-CoB and methane. Wagner et al. report a high-resolution structure of the methanogenic heterodisulfide reductase (HdtABC)-[NiFe]-hydrogenase, the enzyme that reduces the disulfide and couples this to the reduction of ferredoxin in an energy-conserving process known as flavin-based electron bifurcation (FBEB) (see the Perspective by Dobbek). The reduced ferredoxin, in turn, drives the first step of methanogenesis. The structure shows how two noncubane [4Fe-4S] clusters perform disulfide cleavage and gives insight into the mechanism of FBEB. Science , this issue p. 699 ; see also p. 642

27 November 2011 in Nature
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SSSeigo Shima
Seigo Shima
MKMartin Krueger
Martin Krueger
TWTobias Weinert
Tobias Weinert
UDUlrike Demmer
Ulrike Demmer
JKJörg Kahnt
Jörg Kahnt
UEUlrich Ermler
Ulrich Ermler

7 October 2016 in Science
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TWTristan Wagner
Tristan Wagner
UEUlrich Ermler
Ulrich Ermler
SSSeigo Shima
Seigo Shima
The long and winding road to methane: The process by which archaea make methane involves a series of reactions and enzymes. First, CO 2 and methanofuran (MFR) are reduced to formyl-MFR by an as yet unresolved mechanism. Wagner et al. solved the x-ray crystal structure of a tungsten-containing formyl-MFR dehydrogenase complex. Two active sites in the complex are separated by a 43-Å tunnel, which is responsible for transferring the formate made after CO 2 reduction. The complex also contains a chain of 46 iron-sulfur clusters. Although the exact function of this chain is unclear, it may electronically couple the four tungsten redox centers. Science , this issue p. 114

12 August 2009 in Angewandte Chemie International Edition
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THTakeshi Hiromoto
Takeshi Hiromoto
EWEberhard Warkentin
Eberhard Warkentin
JMJohanna Moll
Johanna Moll
UEUlrich Ermler
Ulrich Ermler
SSSeigo Shima
Seigo Shima