Shixiong Ding

Mr. Shixiong Ding

Jiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and Utilization, Forestry College, Jiangxi Agricultural University
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orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 April 2021 in Forests
Verified
Journal Article
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SDShixiong Ding
Shixiong Ding
DXDONG XIANG
DONG XIANG
JYjiaxin Yang
jiaxin Yang
CGChunce Guo
Chunce Guo
BCBinbin Cao
Binbin Cao
Guangwan HuGuangwan Hu
Guangwan Hu
Clethra fargesii, an essential ecological and endemic woody plant of the genus Clethra in Clethraceae, is widely distributed in Central China. So far, there have been a paucity of studies on its chloroplast genome. In the present study, we sequenced and assembled the complete chloroplast genome of C. fargesii. We also analyzed the chloroplast genome features and compared them to Clethra delavayi and other closely related species in Ericales. The complete chloroplast genome is 157,486 bp in length, including a large single-copy (LSC) region of 87,034 bp and a small single-copy (SSC) region of 18,492 bp, separated by a pair of inverted repeat (IR) regions of 25,980 bp. The GC content of the whole genome is 37.3%, while those in LSC, SSC, and IR regions are 35.4%, 30.7%, and 43.0%, respectively. The chloroplast genome of C. fargesii encodes 132 genes in total, including 87 protein-coding genes (PCGs), 37 tRNA genes, and eight rRNA genes. A total of 26,407 codons and 73 SSRs were identified in C. fargesii chloroplast genome. Additionally, we postulated and demonstrated that the structure of the chloroplast genome in Clethra species may present evolutionary conservation based on the comparative analysis of genome features and genome alignment among eight Ericales species. The low Pi values revealed evolutionary conservation based on the nucleotide diversity analysis of chloroplast genome in two Clethra species. The low selection pressure was shown by a few positively selected genes by adaptive evolution analysis using 80 coding sequences (CDSs) of the chloroplast genomes of two Clethra species. The phylogenetic tree showed that Clethraceae and Ericaceae are sister clades, which reconfirm the previous hypothesis that Clethra is highly conserved in the chloroplast genome using 75 CDSs of chloroplast genome among 40 species. The genome information and analysis results presented in this study are valuable for further study on the intraspecies identification, biogeographic analysis, and phylogenetic relationship in Clethraceae.

21 July 2022 in Pharmaceuticals
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Emmanuel WaswaEmmanuel Waswa
Emmanuel Waswa
FMFelix Muema
Felix Muema
WOwyclif Ochieng odago
wyclif Ochieng odago
Elizabeth MutindaElizabeth Mutinda
Elizabeth Mutinda
CNConsolata Nanjala
Consolata Nanjala
Guangwan HuGuangwan Hu
Guangwan Hu
Blechnum L. is a genus belonging to the Blechnaceae family with 236 accepted species that grow in intertropical, subtropical, and southern temperate regions. Several species of the genus have long been used in folk medicines to treat a broad spectrum of ailments, including typhoid, urinary infections, influenza, wounds, pulmonary complaints, blisters, boils, and antihelmintic-related complications. So far, about 91 chemical compounds have been isolated from different parts of 20 Blechnum species. Among these metabolites, phenolic compounds, sterols, and fatty acids are the main constituents. Modern pharmacological investigations revealed several isolated compounds and extracts to exhibit exceptional biological properties including the antioxidant, antimicrobial, anti-inflammatory, anticancer, insecticidal, antitrematocidal and wound healing. In various tests, both quercetin-7′,3′,4′-trimethoxy and phytol metabolites showed potential antioxidant and antitrematocidal properties, while ponasterone exhibited insecticidal activity. Despite having a broad range of traditional medicinal benefits and biological properties, understanding the scientific connotations based on the available data is still challenging. This article presents a comprehensive review of the traditional uses, phytochemical compounds, and pharmacological aspects of the Blechnum species.

18 December 2022 in Genes
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Journal Article
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SDShixiong Ding
Shixiong Ding
JLJia-Chen Li
Jia-Chen Li
KHKe Hu
Ke Hu
ZHZi-Jian Huang
Zi-Jian Huang
RLRuisen Lu
Ruisen Lu
Pyracantha fortuneana (Maxim.) Li (Rosaceae), commonly known as Chinese firethorn, is an evergreen shrub with high nutritional, medicinal, and horticultural importance. This species typically has white flowers, but a rare red flower phenotype has been found in very few wild populations in western Hubei, China, showing great ornamental potential. In this study, the complete chloroplast genome of the red flower phenotype of P. fortuneana was reported for the first time, using high-throughput sequencing technology. The complete chloroplast genome was 160,361 bp in length and showed a typical quadripartite structure with a pair of inverted repeat (IR) regions (26,350 bp) separated by a large single-copy (LSC) region (88,316 bp) and a small single-copy (SSC) region (19,345 bp). A total of 131 functional genes were annotated in this chloroplast genome, including 86 protein-coding genes (PCGs), eight rRNA genes, and 37 tRNA genes. Comparative chloroplast genome analyses revealed that high genome similarity existed not only between red and white flower phenotypes of P. fortuneana, but also among Pyracantha species. No evidence for positive selection was found in any PCG, suggesting the evolutionary conservation of Pyracantha chloroplast genomes. Furthermore, four mutational hotspots (trnG-trnR-atpA, psbZ-trnG-trnfM-rps14, ycf3-trnS-rps4, and ndhF-rpl32) with π > 0.004 were identified as potential molecular markers for Pyracantha species. Phylogenomic analysis strongly supported that the red flower phenotype of P. fortuneana was nested within the common white flower phenotype. Based on both morphological and molecular evidence, we suggest that the red flower phenotype of P. fortuneana could be considered as a new forma. Overall, the availability of these genetic resources will not only offer valuable information for further studies on molecular taxonomy, phylogeny, and population genetics of Pyracantha species but also could be used as potential genetic resources for Chinese firethorn breeding.

1 September 2022 in Phytotaxa
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Journal Article
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SDShixiong Ding
Shixiong Ding
HLHui-Hua Liu
Hui-Hua Liu
BWBen-Zhong Wang
Ben-Zhong Wang
SPShuai Peng
Shuai Peng
HJHui Jiang
Hui Jiang
Guangwan HuGuangwan Hu
Guangwan Hu
Impatiens piufanensis var. villosa, a new variety of Balsaminaceae from Hubei and Hunan, China, is described and illustrated here. Morphologically, it can be distinguished from the nominate variety by its stem, leaves, lateral sepals, lower sepal and the midvein of upper petal covered by dense white villus and puberulent peduncles and pedicels. The phylogenetic analysis based on ITS sequence also supports its treatment as a new variety of I. piufanensis.

1 February 2023 in Botanical Studies
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Journal Article
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SDShixiong Ding
Shixiong Ding
HJHui Jiang
Hui Jiang
JTJing Tian
Jing Tian
JRJing Ren
Jing Ren
FMFredrick Munyao Mutie
Fredrick Munyao Mutie
QWQing-Feng Wang
Qing-Feng Wang
Background: The genus Veronicastrum Heist. ex Fabr. are mainly distributed in East Asia, and only Veronicastrum virginicum (L.) Farw. is disjunctively distributed in eastern North America. The south area of China (extending to Taiwan Island) is the richest in Veronicastrum species. It is of medicinal importance in China as traditional herbs used to treat ascites diseases that caused by schistosomiasis. During field investigation of plant resources in Pingbaying National Forest Park, Southwestern Hubei, China, an unknown flowering population of Veronicastrum was discovered from thick humus layers adjacent to rocks under broad-leaved forests by walkways. They were collected and morphological characters assesed for further taxonomic treatment. Molecular analysis was also conducted to ascertain its phylogenetic position in the genus Veronicastrum. Results: This species is similar to Veronicastrum liukiuense (Ohwi) T.Yamaz. from the Ryukyu Islands, but can be distinctly differed by its axillary inflorescences (versus terminal on short leafy branches), pedicels up to 2.5 mm (versus sessile), corollas purple to purple-red (versus white tinged with pale purple) and florescence June to July (versus September to October). Also, phylogenetic studies showed the species was an independent clade in the genus Veronicastrum based on the maximum likelihood (ML) analyses using two different matrix sequences of concatenated molecular markers. The plastid genome of this new species is also reported in this study for the first time. Conclusion: The morphological and molecular evidences support the recognition of Veronicastrum wulingense as a new species.

11 March 2022 in Research Square
Verified
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SDShixiong Ding
Shixiong Ding
HJHui Jiang
Hui Jiang
JTJing Tian
Jing Tian
JRJing Ren
Jing Ren
FMFredrick Munyao Mutie
Fredrick Munyao Mutie
QWQing-Feng Wang
Qing-Feng Wang
Background: Veronicastrum, perennial herbs, the traditional herbs treated ascites diseases that caused by schistosomiasis in China, are mainly distributed in East Asia, and only Veronicastrum virginicum (L.) Farw. is disjunctively distributed in eastern North America. The south area of China (including Taiwan Island) is the richest in Veronicastrum species. During a field investigation of plant resources in Pingbaying National Forest Park, Southwestern Hubei, China, an unknown flowering population of Veronicastrum was found and collected on the thick humus layers adjacent to rocks under broad-leaved forests by walkways.Results: This new species is similar to V. axillare and V. rhombifolium, but can be distinctly differs by these diagnostic characteristics of peduncles up to 7 cm, flowers clustered densely in rachis apex and steadily ca. 2–3 cm long, and pedicels up to 2.5 mm, which are unique in the all known Veronicastrum species of axillary inflorescences.Conclusions: This new species Veronicastrum wulingense is supported by morphological and molecular evidence, and its plastid genome is reported in this study.