Although ammonia–nitrogen (NH₄⁺–N) and nitrate–nitrogen (NO₃⁻–N) are the two main forms of N absorbed and utilized by plants, the preferences of plants for these forms are still unclear. In this study, we analyzed the growth, photosynthesis, and nutrients of pecan under different NH₄⁺:NO₃⁻ ratios (0/0, 0/100, 25/75, 50/50, 75/25, 100/0) by indoor aerosol incubation. The results showed that additions of different N forms promoted the growth and development of pecan seedlings. When NO₃⁻–N was used as the sole N source, it significantly promoted the ground diameter growth of pecan and increased the leaf pigment content and photosynthetic rate. The NH₄⁺:NO₃⁻ ratio of 75:25 and NH₄⁺–N as the sole N source significantly increased the soluble sugars in stems and roots, starch in leaves, stems and roots, soluble protein in leaves and stems, and soluble phenols in stems and roots. Additionally, the NH₄⁺:NO₃⁻ ratio of 75:25 increased plant height, leaf number, root soluble protein, and leaf soluble phenol contents. In conclusion, regarding the physiological aspects of pecan growth, pecans are more inclined to use NH₄⁺–N. Considering that the NH₄⁺–N as the only N source may lead to nutrient imbalance or even toxicity, the NH₄⁺:NO₃⁻ ratio of 75:25 was most favorable for the growth and development of pecan seedlings.

The rhizosphere microbiome is closely related to forest health and productivity. However, whether soil type affects pecan (Carya illinoinensis) rhizosphere microbiomes is unclear. We aimed to explore the diversity and structural characteristics of rhizosphere bacteria associated with pecan plantations grown in three soil types (Luvisols, Cambisols, Solonchaks) in Eastern China and analyze their potential functions through high-throughput sequencing. The results showed that the diversity and community structure of rhizosphere bacteria in pecan plantations were significantly affected by soil type and the pH, available phosphorus content, electrical conductivity, soil moisture, and ammonium nitrogen contents were the main factors. At the phylum level, the rhizosphere bacterial community composition was consistent, mainly included Actinobacteria, Proteobacteria, Acidobacteria, and Chloroflexi. At the family level, the pecan plantations formed different rhizosphere enriched biomarkers due to the influence of soil type, with functional characteristics such as plant growth promotion and soil nutrient cycling. In addition, there existed low abundance core species such as Haliangiaceae, Bryobacteraceae, and Steroidobacteraceae. They played important roles in the rhizosphere environments through their functional characteristics and community linkages. Overall, this study provides a basis for the study of the rhizosphere microbiome in different soil types of pecan plantations, and plays an important role in the sustainable management of forest soil.

Nitrogen (N) is a major limiting factor for plant growth and crop production. The use of N fertilizer in forestry production is increasing each year, but the loss is substantial. Mastering the regulatory mechanisms of N uptake and transport is a key way to improve plant nitrogen use efficiency (NUE). However, this has rarely been studied in pecans. In this study, 10 AMT and 69 NRT gene family members were identified and systematically analyzed from the whole pecan genome using a bioinformatics approach, and the expression patterns of AMT and NRT genes and the uptake characteristics of NH₄⁺ and NO₃⁻ in pecan were analyzed by aeroponic cultivation at varying NH₄⁺/NO₃⁻ ratios (0/0, 0/100,25/75, 50/50, 75/25,100/0 as CK, T1, T2, T3, T4, and T5). The results showed that gene duplication was the main reason for the amplification of the AMT and NRT gene families in pecan, both of which experienced purifying selection. Based on qRT-PCR results, CiAMTs were primarily expressed in roots, and CiNRTs were majorly expressed in leaves, which were consistent with the distribution of pecan NH₄⁺ and NO₃⁻ concentrations in the organs. The expression levels of CiAMTs and CiNRTs were mainly significantly upregulated under N deficiency and T4 treatment. Meanwhile, T4 treatment significantly increased the NH₄⁺, NO₃⁻, and NO₂⁻ concentrations as well as the Vmax and Km values of NH₄⁺ and NO₃⁻ in pecans, and Vmax/Km indicated that pecan seedlings preferred to absorb NH₄⁺. In summary, considering the single N source of T5, we suggested that the NH₄⁺/NO₃⁻ ratio of 75:25 was more beneficial to improve the NUE of pecan, thus increasing pecan yield, which provides a theoretical basis for promoting the scale development of pecan and provides a basis for further identification of the functions of AMT and NRT genes in the N uptake and transport process of pecan.

Although they are a valuable edible ectomycorrhizal fungus, truffles (Tuber spp.) nevertheless face significant difficulties in the development of their scale. As a type of high economic value nut-like economic forest tree, the pecan (Carya illinoinensis) serves as a natural host for truffles. However, the technology for mycorrhizal synthesis in pecan has not yet been developed, and it is still unclear how certain microbes affect this process. In this study, we inoculated the pecan root system with a suspension of truffle spores and investigated the growth physiology of pecan seedlings with various infestation levels, as well as changes in the soil’s physicochemical properties and the makeup of the microbial community at the root level. The findings showed that tuber inoculation significantly increased the peroxidase activity of the pecan root system, significantly decreased the pH, and effective phosphorus content of mycorrhizosphere soil, while increasing the nitrate nitrogen content, and significantly increased the abundance and diversity of the mycorrhizosphere soil fungal community. Different groups of fungal and bacterial markers were formed in the mycorrhizosphere of pecan seedlings at different levels of infestation. In the highly infested group, Rozellomycota and lasiosphaeriaceae were the difference marker fungi, and Xanthobacteraceae, Rhizobiaceae as well as Streptococcaceae were the difference marker bacteria. In the low-infestation group, sphaerosporella was differential marker fungi, and Bacillus and Tumebacillus were differential marker bacteria. The fungal marker flora of the control group consisted of Chaetomium and Gilmaniella. Pseudomonas was the marker bacterial community. Additionally, these fungi included Collarina and Rozellomycota, and several bacteria from the genera Pseudomonas, Gemmatimonas, and others showed highly significant relationships with changes in soil pH, effective phosphorus, and nitrate nitrogen. In conclusion, pecan–truffle mycorrhizal seedlings have the potential to create the ideal microbial community structure needed for mycorrhizal growth, and these microorganisms have the potential to significantly alter the pH, effective phosphorus content, and nitrate nitrogen concentration of the mycorrhizosphere soil. Our results contribute to the understanding of how the mycorrhizosphere microbial community evolves when exogenous mycorrhizal fungi infest host plants and can offer some theoretical guidelines for growing pecan–truffle mycorrhizal seedlings.

Mitogen-activated protein kinases consist of three kinase modules composed of MPKs, MKKs, and MPKKKs. As members of the protein kinase (PK) superfamily, they are involved in various processes, such as developmental programs, cell division, hormonal progression, and signaling responses to biotic and abiotic stresses. In this study, a total of 18 MPKs and 10 MKKs were annotated on the pecan genome, all of which could be classified into four subgroups, respectively. The gene structures and conserved sequences of family members in the same branch were relatively similar. All MPK proteins had a conserved motif TxY, and D(L/I/V)K and VGTxxYMSPER existed in all MKK proteins. Duplication events contributed largely to the expansion of the pecan MPK and MKK gene families. Phylogenetic analysis of protein sequences from six plants indicated that species evolution occurred in pecan. Organ-specific expression profiles of MPK and MKK showed functional diversity. Ka/Ks values indicated that all genes with duplicated events underwent strong negative selection. Seven CiPawMPK and four CiPawMKK genes with high expression levels were screened by transcriptomic data from different organs, and these candidates were validated by qRT-PCR analysis of hormone-treated and stressed samples.

The home-field advantage (HFA) effect has been reported to occur in coarse woody debris (CWD) and litter. It is thought that the HFA effect may be due to the specialization of decomposers in their original habitats. However, the relative contribution of microorganisms, particularly fungi and bacteria, to deadwood decomposition is unclear because of differences in their functional at-tributes and carbon requirements, and the microorganisms that drive the HFA effect of deadwood are also unclear. Here, we analysed a dataset of microbial PLFA and substrate properties collected from the soil and CWD of two subtropical trees, Cryptomeria japonica and Platycarya strobilacea, from forests dominated by one or the other of the two species, with both species present in the forests. Our results showed that habitat and tree types all significantly affected CWD respiration rates, the CWD respiration rates were significantly higher in the deciduous broadleaf forests (DBF) than in the coniferous forest (CF) regardless of tree types, but no a large HFA of CWD decomposition found (HFA index was 4.75). Most biomarkers indicated bacteria and fungi were more abundant in the DBF than in the CF, and the concentration of microbial PLFAs was higher in Platycarya strobilacea than in Cryptomeria japonica. In addition, the relative abundance of fungi and soil B/F were remarkably positively correlated with CWD respiration, indicating that fungi may be the primary decomposers of CWD. In conclusion, our work highlights the importance of interactions between the three primary drivers (environment, substrate quality and microbes) on CWD decomposition.