Gaspard Harerimana

Gaspard Harerimana


Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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24 August 2020 in Applied Sciences
Verified
Journal Article
Open access
PDF file
BJBeakcheol Jang
Beakcheol Jang
MKMyeonghwi Kim
Myeonghwi Kim
GHGaspard Harerimana
Gaspard Harerimana
SKSang-ug Kang
Sang-ug Kang
Jong Wook KimJong Wook Kim
Jong Wook Kim
There is a need to extract meaningful information from big data, classify it into different categories, and predict end-user behavior or emotions. Large amounts of data are generated from various sources such as social media and websites. Text classification is a representative research topic in the field of natural-language processing that categorizes unstructured text data into meaningful categorical classes. The long short-term memory (LSTM) model and the convolutional neural network for sentence classification produce accurate results and have been recently used in various natural-language processing (NLP) tasks. Convolutional neural network (CNN) models use convolutional layers and maximum pooling or max-overtime pooling layers to extract higher-level features, while LSTM models can capture long-term dependencies between word sequences hence are better used for text classification. However, even with the hybrid approach that leverages the powers of these two deep-learning models, the number of features to remember for classification remains huge, hence hindering the training process. In this study, we propose an attention-based Bi-LSTM+CNN hybrid model that capitalize on the advantages of LSTM and CNN with an additional attention mechanism. We trained the model using the Internet Movie Database (IMDB) movie review data to evaluate the performance of the proposed model, and the test results showed that the proposed hybrid attention Bi-LSTM+CNN model produces more accurate classification results, as well as higher recall and F1 scores, than individual multi-layer perceptron (MLP), CNN or LSTM models as well as the hybrid models.


3 October 2022 in IEEE Access
Verified
Journal Article
Open access
GHGaspard Harerimana
Gaspard Harerimana
Jong Wook KimJong Wook Kim
Jong Wook Kim
BJBeakcheol Jang
Beakcheol Jang
Deep learning has progressively been the spotlight of innovations that aim to leverage the clinical time-series data that are longitudinally recorded in the Electronic Health Records(EHR) to forecast the patient’s survival and vital signs deterioration. However, their recording velocity, as well as their noisiness, hinder the proper adoption of the recently proposed benchmarks. The Recurrent Neural Networks (RNN) especially the Long-short Term Memory (LSTMs) have achieved better results in recent studies but they are hard to train and interpret and fail to properly capture the long-term dependencies. Moreover, the RNNs suffer greatly with clinical time series due to their sequential processing which cripples the prospect of parallel processing. Recently the Transformer approach was proposed for Natural Language Processing (NLP) tasks and achieved state-of-the-art results. Hence to tackle the drawbacks that are suffered by the RNNs we propose a clinical time series Multi-head Transformer (MHT), which is a transformer-based model that forecasts the patient’s future time series variables using the vitals signs. To prove the generalization of the model we use the same model for other critical tasks that describe the Intensive Care Unit (ICU) patient’s progression and the associated risks like the remaining Length Of Stay(LoS), the In-hospital Mortality as well as the 24 hours mortality. Our model achieves an Area Under The Curve-Receiver Operating Characteristics(AUC-ROC) of 0.98 and an Area Under the Curve, Precision-Recall (AUC-PR) of 0.424 for vital time series prediction, and an AUC-ROC of 0.875 in the mortality prediction. The model performs well for the frequently recorded variables like the Heart Rate (HR) and performs barely like the LSTM counterparts for the intermittently captured records such as the White Blood Count (WBC).

28 September 2023 in IEEE Access
Verified
Journal Article
Open access
GHGaspard Harerimana
Gaspard Harerimana
GKGun Il Kim
Gun Il Kim
Jong Wook KimJong Wook Kim
Jong Wook Kim
BJBeakcheol Jang
Beakcheol Jang
The prognosis of a patient’s re-admission and the forecast of future diagnoses is a critical task in the process of inferring clinical outcomes. The discharge summaries recorded in the Electronic Health Records (EHR) are stinking rich but they are also heterogeneous, sparse, noisy, and biased, and hinder the learning algorithms that aim to extract actionable insights from them. The existing approaches use the current admission’s International Classification of Diseases (ICD) codes as input but they do not fully describe the progression of the patient. Other systems apply the attention mechanisms directly to these notes without the guidance of a domain knowledge resulting in distorted predictions. In this work, we propose a hybrid LSTM-CNN self-guided attention model that aims to predict the ICD diagnosis that is likely to cause the next readmission within 90 days since the current discharge using the discharge narratives. Because the notes contain unnecessary tokens, the model leverages the recent advances in deep learning to predict the patient’s future diagnosis by reducing the number of tokens from the notes to be considered for prediction. We use a 1D CNN (Convolutional Neural Network) to capture all features from the note and concurrently an LSTM (Long Short-Term Memory) is used to extract the features of clinically meaningful Concept Unique Identifiers (CUI) that are fetched from the note itself to build a knowledge base. The textual knowledge base guides the learning module about which n-grams from the note to focus on for prediction. We consider 3 prediction scenarios; diagnosis category prediction, the probability of the occurrence of one of the top 20 disease conditions and ICD9 codes prediction. For the diagnosis category prediction, the model achieves a Macro-Average ROC of 0.82, an AUROC of 0.87 for most the Top 20 most appearing diseases prediction, and a Micro-RECALL of 0.84 for ICD9 codes prediction. The predictive accuracy of the model is assessed through the prediction of heart failure onset and for all these prediction scenarios the results show that the hybrid approach outperforms the existing baselines.

27 May 2023
Verified
Book Chapter
Closed access
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UAUmurerwa Marie Adeline
Umurerwa Marie Adeline
GHGaspard Harerimana
Gaspard Harerimana
KIKabandana Innocent
Kabandana Innocent