Both the bulbs and flowers of Fritillaria thunbergii Miq. (BFT and FFT) are widely applied as expectorants and antitussives in traditional Chinese medicine, but few studies have been conducted to compare the chemical compositions of these plant parts. In this study, 50% methanol extracts of BFT and FFT were analyzed via UHPLC-Q-Exactive Orbitrap MS/MS, and the feasibility of using non-targeted UHPLC-HRMS metabolomics and molecular networking to address the authentication of bulb and flower samples was evaluated. Principal component analysis (PCA), Orthogonal Partial Least Squares-Discriminant Analysis (OPLS-DA), and heat map analysis showed there were dissimilar metabolites in BFT and FFT. As a result, 252 and 107 peaks in positive ion mode and negative mode, respectively, were considered to represent significant difference variables between BFT and FFT. Then, MS/MS-based molecular networking of BFT and FFT was constructed to perform an in-depth characterization of the peaks using different variables. A total of 31 alkaloids with significant differences were annotated in this paper, including seven cis-D/E-vevanine without C20-OH and one trans-D/E-cevanine with C20-OH, thirteen trans-D/E-cevanine without C20-OH, five cevanine N-oxide, and five veratramine. Among the 31 alkaloids, eight alkaloids had higher FFT than BFT contents, while all the flavonoids identified in our work had greater FFT than BFT contents. The influence of different ingredients on the pharmacological activities of BFT and FFT should be investigated in future studies.

Elsholtzia splendens Nakai ex F. Maek. has been employed in traditional Chinese medicine for millennia. Nevertheless, the small size and the paucity of research on its pharmacological effects have restricted its extensive utilisation in clinical medicine. Polyploid breeding represents an effective method for the rapid enhancement of plant biomass and metabolites. In this study, the most effective in vitro method for inducing tetraploid formation was identified as axillary buds treated in a solution of colchicine at a concentration of 1% for 24 h. Meanwhile, a comparison between tetraploids and diploids yielded two significant findings: (1) The presence of 6-zonocolpate and 8-zonocolpate pollen grains can be used as distinguishing characteristics for diploid and tetraploid, respectively. (2) Genome duplication resulted in alterations to the polyphenol species and synthesis pathway in E. splendens. The accumulation of wogonin, oroxylin A, baicalin, chrysin, acacetin and related derivatives was markedly greater in tetraploid plants, whereas apigenin, naringenin, scutellarein and related derivatives were found to accumulate to a greater extent in diploid plants. It is noteworthy that wogonin and oroxylin A were uniquely detected in tetraploids, indicating that the generated tetraploids may harbor novel pharmacological value. The findings not only provided new insights into the metabolic mechanism of polyploidisation but also established a foundation for the selection and breeding of novel genetic resources of E. splendens.