and Kausik Si

and Kausik Si


Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 March 2020 in Science
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Journal Article
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RHRuben Hervas
Ruben Hervas
MRMichael J. Rau
Michael J. Rau
YPYounshim Park
Younshim Park
WZWenjuan Zhang
Wenjuan Zhang
AMAlexey G. Murzin
Alexey G. Murzin
ASand Kausik Si
and Kausik Si
How amyloid can be a substrate of memory: Formation of memories requires changes in the molecular composition of the synapse. How these changes occur and what maintains this altered synaptic composition so that memory can persist are unknown. Hervas et al. report the structure of a synaptic translation regulator called Orb2 isolated from the brains of adult fruit flies that is important for the maintenance and recall of memory. Orb2 forms an amyloid and changes its activity from a translation repressor to an activator. The amyloid core is composed of polar hydrophilic residues, as opposed to the hydrophobic ones found in nonfunctional or pathological amyloids. The structure provides insights into how amyloids could be a stable yet malleable substrate of memory. Science , this issue p. 1230

1 December 2015 in Cell
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Journal Article
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MKMohammed Repon Khan
Mohammed Repon Khan
LLLiying Li
Liying Li
CPConsuelo Pérez-Sánchez
Consuelo Pérez-Sánchez
ASAnita Saraf
Anita Saraf
LFLaurence Florens
Laurence Florens
ASand Kausik Si
and Kausik Si

1 April 2016 in Cold Spring Harbor Perspectives in Biology
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ASand Kausik Si
and Kausik Si
EKEric R. Kandel
Eric R. Kandel
Prions are a self-templating amyloidogenic state of normal cellular proteins, such as prion protein (PrP). They have been identified as the pathogenic agents, contributing to a number of diseases of the nervous system. However, the discovery that the neuronal RNA-binding protein, cytoplasmic polyadenylation element-binding protein (CPEB), has a prion-like state that is involved in the stabilization of memory raised the possibility that prion-like proteins can serve normal physiological functions in the nervous system. Here, we review recent experimental evidence of prion-like properties of neuronal CPEB in various organisms and propose a model of how the prion-like state may stabilize memory.

26 January 2016 in PLOS Biology
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RHRubén Hervás
Rubén Hervás
LLLiying Li
Liying Li
AMAmitabha Majumdar
Amitabha Majumdar
MFMaría del Carmen Fernández-Ramírez
María del Carmen Fernández-Ramírez
JUJay R. Unruh
Jay R. Unruh
MCMariano Carrión-Vázquez
Mariano Carrión-Vázquez
Amyloids are ordered protein aggregates that are typically associated with neurodegenerative diseases and cognitive impairment. By contrast, the amyloid-like state of the neuronal RNA binding protein Orb2 in Drosophila was recently implicated in memory consolidation, but it remains unclear what features of this functional amyloid-like protein give rise to such diametrically opposed behaviour. Here, using an array of biophysical, cell biological and behavioural assays we have characterized the structural features of Orb2 from the monomer to the amyloid state. Surprisingly, we find that Orb2 shares many structural traits with pathological amyloids, including the intermediate toxic oligomeric species, which can be sequestered in vivo in hetero-oligomers by pathological amyloids. However, unlike pathological amyloids, Orb2 rapidly forms amyloids and its toxic intermediates are extremely transient, indicating that kinetic parameters differentiate this functional amyloid from pathological amyloids. We also observed that a well-known anti-amyloidogenic peptide interferes with long-term memory in Drosophila. These results provide structural insights into how the amyloid-like state of the Orb2 protein can stabilize memory and be nontoxic. They also provide insight into how amyloid-based diseases may affect memory processes. Amyloids are ordered protein aggregates typically associated with neurodegenerative diseases, such as Alzheimer disease and Parkinson disease, which usually result in cognitive impairment. However, the amyloid state of the neuronal RNA binding protein Orb2 shows a quite opposite behaviour: instead of impairment, it is associated with memory consolidation. Here, we have characterized the structural features of Orb2 from the monomer to the amyloid state in order to determine why it shows this unexplained puzzling behaviour. Surprisingly, we find that Orb2 shares many structural traits with pathological amyloids. However, Orb2 rapidly forms amyloids, and its toxic intermediates are transient. Furthermore, we find that an anti-amyloidogenic peptide that blocks the initial structural transitions in pathological amyloids also blocks Orb2 amyloid formation and memory consolidation. Our results provide structural insights into how Orb2 amyloids can mediate stable memory while being nontoxic and how amyloid-based diseases may affect memory processes. They also suggest a new pharmacological approach for blocking memory consolidation.

14 June 2010 in Proceedings of the National Academy of Sciences
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Journal Article
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TMTomoko Mastushita-Sakai
Tomoko Mastushita-Sakai
EWErica White-Grindley
Erica White-Grindley
JSJessica Samuelson
Jessica Samuelson
CSChris Seidel
Chris Seidel
ASand Kausik Si
and Kausik Si
In the study of long-term memory, how memory persists is a fundamental and unresolved question. What are the molecular components of the long-lasting memory trace? Previous studies in Aplysia and Drosophila have found that a neuronal variant of a RNA-binding protein with a self-perpetuating prion-like property, cytoplasmic polyadenylation element binding protein, is required for the persistence of long-term synaptic facilitation in the snail and long-term memory in the fly. In this study, we have identified the mRNA targets of the Drosophila neuronal cytoplasmic polyadenylation element binding protein, Orb2 . These Orb2 targets include genes involved in neuronal growth, synapse formation, and intriguingly, protein turnover. These targets suggest that the persistent form of the memory trace might be comprised of molecules that maintain a sustained, permissive environment for synaptic growth in an activated synapse.

12 October 2018 in PLOS Genetics
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RBRaquel Barajas-Azpeleta
Raquel Barajas-Azpeleta
JWJianping Wu
Jianping Wu
JGJason Gill
Jason Gill
RWRyan Welte
Ryan Welte
CSChris Seidel
Chris Seidel
ASand Kausik Si
and Kausik Si
Antimicrobial peptides act as a host defense mechanism and regulate the commensal microbiome. To obtain a comprehensive view of genes contributing to long-term memory we performed mRNA sequencing from single Drosophila heads following behavioral training that produces long-lasting memory. Surprisingly, we found that Diptericin B, an immune peptide with antimicrobial activity, is upregulated following behavioral training. Deletion and knock down experiments revealed that Diptericin B and another immune peptide, Gram-Negative Bacteria Binding Protein like 3, regulate long-term but not short-term memory or instinctive behavior in Drosophila. Interestingly, removal of DptB in the head fat body and GNBP-like3 in neurons results in memory deficit. That putative antimicrobial peptides influence memory provides an example of how some immune peptides may have been repurposed to influence the function of nervous system. It is becoming evident that the nervous system and immune system share not only some of the same molecular logic but also the same components. Here, we report a novel and unanticipated example of how immune genes influence nervous system function. Exploring how Drosophila form long-lasting memories of certain experiences, we have found that antimicrobial peptides that fight bacteria in the body, are expressed in the head, and control whether an animal will form long-term memory of a food source or an unsuccessful mating experience. Antimicrobial peptides are detected in the brain of many species and has often been associated with dysfunction of the nervous system. This and other recent works, provide an explanation to why antimicrobial peptides may be expressed in the head: they regulate normal functions of the brain. Both eating, and mating engage the immune system in preparation of exposure to external agents including bacteria. We speculate antimicrobial peptides were upregulated in the body to deal with immune challenges and over evolutionary time some of them are co-adopted to activate signaling pathways to convey specific information to the nervous system.