Arbuscular mycorrhizal fungi are asexual, obligately symbiotic fungi with unique morphology and genomic structure, which occupy a dual niche, that is, the soil and the host root. Consequently, the direct adoption of models for community assembly developed for other organism groups is not evident. In this paper we adapted modern coexistence and assembly theory to arbuscular mycorrhizal fungi. We review research on the elements of community assembly and coexistence of arbuscular mycorrhizal fungi, highlighting recent studies using molecular methods. By addressing several points from the individual to the community level where the application of modern community ecology terms runs into problems when arbuscular mycorrhizal fungi are concerned, we aim to account for these special circumstances from a mycocentric point of view. We suggest that hierarchical spatial structure of arbuscular mycorrhizal fungal communities should be explicitly taken into account in future studies. The conceptual framework we develop here for arbuscular mycorrhizal fungi is also adaptable for other host-associated microbial communities.

Tuna fisheries are the most valuable fisheries in the world, with an estimated market value of at least US$42 billion in 2018. Indonesia plays an important role in the global tuna fisheries and has committed to improve its fisheries management; therefore, a pilot of long-term spatial-temporal data bases was developed in 2012, however none have utilized data to have better understanding for management improvement. In this study, the annual and seasonal variation of large (≥10 kg) Yellowfin Tuna (YFT) catch per unit effort (CPUE) have been investigated and the influence of sea surface temperature (SST) and chlorophyll-a on these variables examined. We used fish landing data from West Nusa Tenggara recorded every month between 2012 and 2017 and analyzed using generalized linear models and generalized additive models. We found a seasonal and annual pattern of tuna abundance affected by SST and chlorophyll-a (chl a) and related to upwelling and El Nino event. These results also suggest that a two-month closure to fishing in August and September in southern Lombok is worth considering by the Government to maximize conservation of stocks due to a high abundance of juveniles emerging during the upwelling months from June to August.

Manta rays ( Mobula birostris and M. alfredi ) are threatened by overexploitation for international trade. Indonesia was home to the world's largest documented manta fishery—Lamakera, in East Nusa Tenggara. However, in 2014, the Indonesian government declared manta rays a protected species. Here we describe an integrated intervention to reduce manta hunting and mortality in Lamakera, which combined community outreach and livelihood‐focused incentives with targeted enforcement actions; and assess its impact over a five‐year period (2013–2018) using a theory‐based research design. Results show that the intervention is associated with a significant decline in manta hunting effort and mortality ( p < .001), which is correlated and temporally‐associated with conservation activities, and did not occur for modeled and natural experiment counterfactuals. Overall, total manta ray mortality declined by 86% by 2018, vs. the 2013 baseline. We conclude that a multifaceted, data‐driven approach reduced illegal hunting and trade of manta rays from 2013 to 2018. However, this impact is not indefinite; new challenges are emerging, which highlight the importance of a long‐term adaptive strategy. We make several recommendations for designing interventions to mitigate trade‐driven over‐exploitation of megafauna: (a) understand diverse drivers of human behavior; (b) adopt data‐driven problem‐oriented planning; (c) continuously document and share learning; (d) establish partnerships with diverse stakeholders to develop resilient institutions for enduring impact.