Zoltan M. Varga

Dr. Zoltan M. Varga

Zebrafish International Resource Center, University of Oregon, Eugene, OR, USA

Research Focus & Metrics

Academic Career Length

19Years (2008-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 July 2009 in Developmental Dynamics
Verified
Journal Article
Open access
PDF file
GVGudrun Viktorin
Gudrun Viktorin
CCChristina Chiuchitu
Christina Chiuchitu
MRMichael Rissler
Michael Rissler
ZVZoltan M. Varga
Zoltan M. Varga
MWMonte Westerfield
Monte Westerfield
emx3 is first expressed in prospective telencephalic cells at the anterior border of the zebrafish neural plate. Knockdown of Emx3 function by morpholino reduces the expression of markers specific to dorsal telencephalon, and impairs axon tract formation. Rescue of both early and late markers requires low‐level expression of emx3 at the one‐ or two‐somite stage. Higher emx3 expression levels cause dorsal telencephalic markers to expand ventrally, which points to a possible role of emx3 in specifying dorsal telencephalon and a potential new function for Wnt/beta‐catenin pathway activation. In contrast to mice, where Emx2 plays a major role in dorsal telencephalic development, knockdown of zebrafish Emx2 apparently does not affect telencephalic development. Similarly, Emx1 knockdown has little effect. Previously, emx3 was thought to be fish‐specific. However, we found all three emx orthologs in Xenopus tropicalis and opossum (Monodelphis domestica) genomes, indicating that emx3 was present in an ancestral tetrapod genome. Developmental Dynamics 238:1984–1998, 2009.

1 June 2018 in Zebrafish
Verified
Journal Article
Open access
JMJennifer L. Matthews
Jennifer L. Matthews
JMJoy M. Murphy
Joy M. Murphy
CCCarrie Carmichael
Carrie Carmichael
HYHuiping Yang
Huiping Yang
TTTerrence Tiersch
Terrence Tiersch
ZVZoltan M. Varga
Zoltan M. Varga
Sperm cryopreservation is a highly efficient method for preserving genetic resources. It extends the reproductive period of males and significantly reduces costs normally associated with maintenance of live animal colonies. However, previous zebrafish (Danio rerio) cryopreservation methods have produced variable outcomes and low post-thaw fertilization rates. To improve post-thaw fertilization rates after cryopreservation, we developed a new extender and cryoprotective medium (CPM), introduced quality assessment (QA), determined the optimal cooling rate, and improved the post-thaw in vitro fertilization process. We found that the hypertonic extender E400 preserved motility of sperm held on ice for at least 6 h. We implemented QA by measuring sperm cell densities with a NanoDrop spectrophotometer and sperm motility with computer-assisted sperm analysis (CASA). We developed a CPM, RMMB, which contains raffinose, skim milk, methanol, and bicine buffer. Post-thaw motility indicated that the optimal cooling rate in two types of cryogenic vials was between 10 and 15°C/min. Test thaws from this method produced average motility of 20% ± 13% and an average post-thaw fertilization rate of 68% ± 16%.

11 March 2009
Verified
Book Chapter
Closed access
PDF file
CCCarrie Carmichael
Carrie Carmichael
MWMonte Westerfield
Monte Westerfield
ZVZoltan M. Varga
Zoltan M. Varga


29 November 2018 in Zebrafish
Verified
Journal Article
Closed access
ZVZoltan M. Varga
Zoltan M. Varga
SEStephen C. Ekker
Stephen C. Ekker
CLChristian Lawrence
Christian Lawrence
Current standards for husbandry and maintenance of zebrafish and other aquatic species in the laboratory are diverse, and are subject to laboratory performance, engineering, and practice standards (the Guide ), institutional interpretation, national animal welfare laws, and cultural differences. Consequently, it is difficult, and probably not advantageous, to establish a single standard in view of the hardy nature of zebrafish and the diversity of research requirements it is used to address. Based on their natural habitat, zebrafish can thrive in a variety of environmental conditions, which is a specific advantage for working with this laboratory organism. However, it also makes reporting and reproducibility difficult, because variations in the husbandry and environmental conditions, including the environmental conditions before and during experiments, are often underreported in the scientific literature. This lack of consistency presents a potential problem for research reproducibility. To begin addressing this emerging scientific gap, the National Institutes of Health's (NIH) Office of Research Infrastructure Programs (ORIP), Division of Construction and Instruments (DCI), hosted a workshop in late 2017, entitled “Zebrafish and Other Aquatic Models: Reporting of Environmental Husbandry Conditions for Rigorous Experiments and Reproducible Results,” that was attended by ∼60 participants. The objectives of the workshop were to bring together a diverse group of stakeholders—researchers, facility managers, veterinarians, journal editors, commercial vendors, and others to (1) review current husbandry and environmental management practices for the care of zebrafish and other aquatic organisms in the laboratory and to (2) propose a process for the development of a minimal set of environmental parameters that should be reported in publications to ensure rigor and robustness of experiments and reproducible outcomes. The participants also discussed how these recommendations, as an initial step, might be collected, disseminated, implemented, and improved upon after future iteration.

1 July 2008 in Developmental Biology
Verified
Journal Article
Closed access
SDSunit Dutta
Sunit Dutta
JDJens-Erik Dietrich
Jens-Erik Dietrich
MWMonte Westerfield
Monte Westerfield
ZVZoltan M. Varga
Zoltan M. Varga