Nineteen teams presented results for the Gene Mention Task at the BioCreative II Workshop. In this task participants designed systems to identify substrings in sentences corresponding to gene name mentions. A variety of different methods were used and the results varied with a highest achieved F₁ score of 0.8721. Here we present brief descriptions of all the methods used and a statistical analysis of the results. We also demonstrate that, by combining the results from all submissions, an F score of 0.9066 is feasible, and furthermore that the best result makes use of the lowest scoring submissions.

A new method for the fault diagnosis of a broken rotor bar and interturn short circuits in induction machines (IMs) is presented. The method is based on the analysis of the three-phase stator current envelopes of IMs using reconstructed phase space transforms. The signatures of each type of fault are created from the three-phase current envelope of each fault. The resulting fault signatures for the new so-called ldquounseen signalsrdquo are classified using Gaussian mixture models and a Bayesian maximum likelihood classifier. The presented method yields a high degree of accuracy in fault identification as evidenced by the given experimental results, which validate this method.

A new signal classification approach is presented that is based upon modeling the dynamics of a system as they are captured in a reconstructed phase space. The modeling is done using full covariance Gaussian mixture models of time domain signatures, in contrast with current and previous work in signal classification that is typically focused on either linear systems analysis using frequency content or simple nonlinear machine learning models such as artificial neural networks. The proposed approach has strong theoretical foundations based on dynamical systems and topological theorems, resulting in a signal reconstruction, which is asymptotically guaranteed to be a complete representation of the underlying system, given properly chosen parameters. The algorithm automatically calculates these parameters to form appropriate reconstructed phase spaces, requiring only the number of mixtures, the signals, and their class labels as input. Three separate data sets are used for validation, including motor current simulations, electrocardiogram recordings, and speech waveforms. The results show that the proposed method is robust across these diverse domains, significantly outperforming the time delay neural network used as a baseline.

Deep neural networks are proposed for short-term natural gas load forecasting. Deep learning has proven to be a powerful tool for many classification problems seeing significant use in machine learning fields such as image recognition and speech processing. We provide an overview of natural gas forecasting. Next, the deep learning method, contrastive divergence is explained. We compare our proposed deep neural network method to a linear regression model and a traditional artificial neural network on 62 operating areas, each of which has at least 10 years of data. The proposed deep network outperforms traditional artificial neural networks by 9.83% weighted mean absolute percent error (WMAPE).

This paper introduces a novel approach to the analysis and classification of time series signals using statistical models of reconstructed phase spaces. With sufficient dimension, such reconstructed phase spaces are, with probability one, guaranteed to be topologically equivalent to the state dynamics of the generating system, and, therefore, may contain information that is absent in analysis and classification methods rooted in linear assumptions. Parametric and nonparametric distributions are introduced as statistical representations over the multidimensional reconstructed phase space, with classification accomplished through methods such as Bayes maximum likelihood and artificial neural networks (ANNs). The technique is demonstrated on heart arrhythmia classification and speech recognition. This new approach is shown to be a viable and effective alternative to traditional signal classification approaches, particularly for signals with strong nonlinear characteristics.