Naveen Kumar Devanga Ragupathi

Dr. Naveen Kumar Devanga Ragupathi


Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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8 January 2018 in BMC Microbiology
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Journal Article
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CSChaitra Shankar
Chaitra Shankar
BVBalaji Medical Veeraraghavan
Balaji Medical Veeraraghavan
LNLaura Eve Buchnan Nabarro
Laura Eve Buchnan Nabarro
RRRaji Ravi
Raji Ravi
NRNaveen Kumar Devanga Ragupathi
Naveen Kumar Devanga Ragupathi
Priscilla RupaliPriscilla Rupali
Priscilla Rupali
Hypervirulent K. pneumoniae (hvKp) causes severe community acquired infections, predominantly in Asia. Though initially isolated from liver abscesses, they are now prevalent among invasive infections such as bacteraemia. There have been no studies reported till date on the prevalence and characterisation of hvKp in India. The objective of this study is to characterise the hypervirulent strains isolated from bacteraemic patients for determination of various virulence genes and resistance genes and also to investigate the difference between healthcare associated and community acquired hvKp with respect to clinical profile, antibiogram, clinical outcome and molecular epidemiology. Seven isolates that were susceptible to all of the first and second line antimicrobials and phenotypically identified by positive string test were included in the study. They were then confirmed genotypically by presence of rmpA and rmpA2 by PCR. Among the study isolates, four were from patients with healthcare associated infections; none were fatal. All patients with community acquired infection possessed chronic liver disease with fatal outcome. Genes encoding for siderophores such as aerobactin, enterobactin, yersiniabactin, allantoin metabolism and iron uptake were identified by whole genome sequencing. Five isolates belonged to K1 capsular type including one K. quasipneumoniae. None belonged to K2 capsular type. Four isolates belonged to the international clone ST23 among which three were health-care associated and possessed increased virulence genes. Two novel sequence types were identified in the study; K. pneumoniae belonging to ST2319 and K. quasipneumoniae belonging to ST2320. Seventh isolate belonged to ST420. This is the first report on whole genome analysis of hypervirulent K. pneumoniae from India. The novel sequence types described in this study indicate that these strains are evolving and hvKp is now spread across various clonal types. Studies to monitor the prevalence of hvKp is needed since there is a potential for the community acquired isolates to develop multidrug resistance in hospital environment and may pose a major challenge for clinical management.

4 February 2019 in Annals of Clinical Microbiology and Antimicrobials
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NRNaveen Kumar Devanga Ragupathi
Naveen Kumar Devanga Ragupathi
BVBalaji Medical Veeraraghavan
Balaji Medical Veeraraghavan
Bacteria belonging to the Burkholderia cepacia complex (Bcc) are among the most important pathogens isolated from cystic fibrosis (CF) patients and in hospital acquired infections (HAI). Accurate identification of Bcc is questionable by conventional biochemical methods. Clonal typing of Burkholderia is also limited due to the problem with identification. Phenotypic identification methods such as VITEK2, protein signature identification methods like VITEK MS, Bruker Biotyper, and molecular targets such as 16S rRNA, recA, hisA and rpsU were reported with varying level of discrimination to identify Bcc. rpsU and/or 16S rRNA sequencing, VITEK2, VITEK MS and Bruker Biotyper could discriminate between Burkholderia spp. and non-Burkholderia spp. Whereas, Bcc complex level identification can be given by VITEK MS, Bruker Biotyper, and 16S rRNA/rpsU/recA/hisA sequencing. For species level identification within Bcc hisA or recA sequencing are reliable. Identification of Bcc is indispensable in CF patients and HAI to ensure appropriate antimicrobial therapy.

28 February 2013 in Asian Pacific Journal of Cancer Prevention
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CVCijo George Vazhappilly
Cijo George Vazhappilly
NRNaveen Kumar Devanga Ragupathi
Naveen Kumar Devanga Ragupathi
PSPalamadai Krishnan Suresh
Palamadai Krishnan Suresh
SKSanjay Kumar
Sanjay Kumar
RKRangasamy Ashok Kumar
Rangasamy Ashok Kumar
Comparative Studies to Evaluate Relative in vitro Potency of Luteolin in Inducing Cell Cycle Arrest and Apoptosis in HaCaT and A375 Cells Skin cancer;luteolin;cytotoxicity;apoptosis;cell cycle; Luteolin is a naturally occurring flavonoid present in many plants with diverse applications in pharmacology. Despite several studies elucidating its significant anti-cancer activity against various cancer cells, the mechanism of action in skin cancer is not well addressed. Hence, we investigated the effects of luteolin in HaCaT (human immortalized keratinocytes) and A375 (human melanoma) cells. The radical scavenging abilities of luteolin were determined spectrophotometrically, prior to a cytotoxic study (XTT assay). Inhibitory effects were assessed by colony formation assay. Further, the capability of luteolin to induce cell cycle arrest and apoptosis were demonstrated by flow cytometry and cellular DNA fragmentation ELISA, respectively. The results revealed that luteolin possesses considerable cytotoxicity against both HaCaT and A375 cells with $IC_{50}$ values of 37.1 ${\mu}M$ and 115.1 ${\mu}M$, respectively. Luteolin also inhibited colony formation and induced apoptosis in a dose and time-dependent manner by disturbing cellular integrity as evident from morphological evaluation by Wright-Giemsa staining. Accumulation of cells in G2/M (0.83-8.14%) phase for HaCaT cells and G0/G1 (60.4-72.6%) phase for A375 cells after 24 h treatment indicated cell cycle arresting potential of this flavonoid. These data suggest that luteolin inhibits cell proliferation and promotes cell cycle arrest and apoptosis in skin cancer cells with possible involvement of programmed cell death, providing a substantial basis for it to be developed into a potent chemopreventive template for skin cancer.

1 January 2020 in Genomics
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Journal Article
Closed access
KVKarthick Vasudevan
Karthick Vasudevan
NRNaveen Kumar Devanga Ragupathi
Naveen Kumar Devanga Ragupathi
JJJobin John Jacob
Jobin John Jacob
BVBalaji Medical Veeraraghavan
Balaji Medical Veeraraghavan

1 February 2019 in Indian Journal of Medical Research
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NRNaveen Kumar Devanga Ragupathi
Naveen Kumar Devanga Ragupathi
YBYamuna Devi Bakthavatchalam
Yamuna Devi Bakthavatchalam
PMPurva Mathur
Purva Mathur
APAgila Kumari Pragasam
Agila Kumari Pragasam
KWKamini Walia
Kamini Walia
BVBalaji Medical Veeraraghavan
Balaji Medical Veeraraghavan
Background & objectives: Plasmid has led to increase in resistant bacterial pathogens through the exchange of antimicrobial resistance (AMR) genetic determinants through horizontal gene transfer. Baseline data on the occurrence of plasmids carrying AMR genes are lacking in India. This study was aimed to identify the plasmids associated with AMR genetic determinants in ESKAPE pathogens. Methods: A total of 112 ESKAPE isolates including Escherichia coli (n=37), Klebsiella pneumoniae (n=48, including 7 pan-drug susceptible isolates), Acinetobacter baumannii (n=8), Pseudomonas aeruginosa (n=1) and Staphylococcus aureus (n=18) were analyzed in the study. Isolates were screened for antimicrobial susceptibility and whole genome sequencing of isolates was performed using Ion Torrent (PGM) sequencer. Downstream data analysis was done using PATRIC, ResFinder, PlasmidFinder and MLSTFinder databases. All 88 whole genome sequences (WGS) were deposited at GenBank. Results: Most of the study isolates showed resistant phenotypes. As analyzed from WGS, the isolates included both known and unknown sequence types. The plasmid analysis revealed the presence of single or multiple plasmids in the isolates. Plasmid types such as IncHI1B(pNDM-MAR), IncFII(pRSB107), IncFIB(Mar), IncFIB(pQil), IncFIA, IncFII(K), IncR, ColKP3 and ColpVC were present in K. pneumoniae. In E. coli, IncFIA, IncFII, IncFIB, Col(BS512), IncL1, IncX3 and IncH were present along with other types. S. aureus harboured seven different plasmid groups pMW2 (rep5), pSAS1 (rep7), pDLK1 (rep10), pUB110 (repUS12), Saa6159 (rep16), pKH12 (rep21) and pSA1308 (rep21). The overall incidence of IncF type plasmids was 56.5 per cent followed by Col type plasmids 18.3 per cent and IncX 5.3 per cent. Other plasmid types identified were <5 per cent. Interpretation & conclusions: Results from the study may serve as a baseline data for the occurrence of AMR genes and plasmids in India. Information on the association between phenotypic and genotypic expression of AMR was deciphered from the data. Further studies on the mechanism of antibiotic resistance dissemination are essential for enhancing clinical lifetime of antibiotics.

29 December 2016 in Microbiology Resource Announcements
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Journal Article
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CSChaitra Shankar
Chaitra Shankar
LNLaura E. B. Nabarro
Laura E. B. Nabarro
NRNaveen Kumar Devanga Ragupathi
Naveen Kumar Devanga Ragupathi
DSDhiviya Prabaa Muthuirulandi Sethuvel
Dhiviya Prabaa Muthuirulandi Sethuvel
JDJones Lionel Kumar Daniel
Jones Lionel Kumar Daniel
BVBalaji Medical Veeraraghavan
Balaji Medical Veeraraghavan
Hypervirulent Klebsiella pneumoniae strains have been increasingly reported worldwide, and there is emergence of carbapenem resistance among them. Here, we report the genome sequences of three carbapenem-resistant hypervirulent K. pneumoniae isolates isolated from bacteremic patients at a tertiary-care center in South India.