Petra Prochazkova  Schrumpfova

Dr. Petra Prochazkova Schrumpfova


Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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18 February 2014 in The Plant Journal
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Journal Article
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PSPetra Prochazkova Schrumpfova
Petra Prochazkova Schrumpfova
IVIvona Vychodilová
Ivona Vychodilová
MDMartina Dvořáčková
Martina Dvořáčková
JMJana Majerská
Jana Majerská
LDLadislav Dokládal
Ladislav Dokládal
JFJiří Fajkus
Jiří Fajkus
Summary: Although telomere‐binding proteins constitute an essential part of telomeres, in vivo data indicating the existence of a structure similar to mammalian shelterin complex in plants are limited. Partial characterization of a number of candidate proteins has not identified true components of plant shelterin or elucidated their functional mechanisms. Telomere repeat binding (TRB) proteins from Arabidopsis thaliana bind plant telomeric repeats through a Myb domain of the telobox type in vitro, and have been shown to interact with POT1b (Protection of telomeres 1). Here we demonstrate co‐localization of TRB1 protein with telomeres in situ using fluorescence microscopy, as well as in vivo interaction using chromatin immunoprecipitation. Classification of the TRB1 protein as a component of plant telomeres is further confirmed by the observation of shortening of telomeres in knockout mutants of the trb1 gene. Moreover, TRB proteins physically interact with plant telomerase catalytic subunits. These findings integrate TRB proteins into the telomeric interactome of A. thaliana.

1 April 2004 in Genome
Verified
Journal Article
Closed access
PSPetra Prochazkova Schrumpfova
Petra Prochazkova Schrumpfova
MKMilan Kuchař
Milan Kuchař
GMGabriela Miková
Gabriela Miková
LSLenka Skříovská
Lenka Skříovská
TKTatiana Kubičárová
Tatiana Kubičárová
JFJiří Fajkus
Jiří Fajkus
Telomere-binding proteins participate in forming a functional nucleoprotein structure at chromosome ends. Using a genomic approach, two Arabidopsis thaliana genes coding for candidate Myb-like telomere binding proteins were cloned and expressed in E. coli. Both proteins, termed AtTBP2 (accession Nos. T46051 (protein database) and GI:638639 (nucleotide database); 295 amino acids, 32 kDa, pI 9.53) and AtTBP3 (BAB08466, GI:9757879; 299 amino acids, 33 kDa, pI 9.88), contain a single Myb-like DNA-binding domain at the N-terminus, and a histone H1/H5-like DNA-binding domain in the middle of the protein sequence. Both proteins are expressed in various A. thaliana tissues. Using the two-hybrid system interaction between the proteins AtTBP2 and AtTBP3 and self interactions of each of the proteins were detected. Gel-retardation assays revealed that each of the two proteins is able to bind the G-rich strand and double-stranded DNA of plant telomeric sequence with an affinity proportional to a number of telomeric repeats. Substrates bearing a non-telomeric DNA sequence positioned between two telomeric repeats were bound with an efficiency depending on the length of interrupting sequence. The ability to bind variant telomere sequences decreased with sequence divergence from the A. thaliana telomeric DNA. None of the proteins alone or their mixture affects telo merase activity in vitro. Correspondingly, no interaction was observed between any of two proteins and the Arabidopsis telo merase reverse transcriptase catalytic subunit TERT (accession No. AF172097) using two-hybrid assay.Key words: plant telomere-binding protein, two-hybrid assay, protein expression, telomerase.

16 January 2019 in Cells
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Journal Article
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PSPetra Prochazkova Schrumpfova
Petra Prochazkova Schrumpfova
MFMiloslava Fojtová
Miloslava Fojtová
JFJiří Fajkus
Jiří Fajkus
Parallel research on multiple model organisms shows that while some principles of telomere biology are conserved among all eukaryotic kingdoms, we also find some deviations that reflect different evolutionary paths and life strategies, which may have diversified after the establishment of telomerase as a primary mechanism for telomere maintenance. Much more than animals, plants have to cope with environmental stressors, including genotoxic factors, due to their sessile lifestyle. This is, in principle, made possible by an increased capacity and efficiency of the molecular systems ensuring maintenance of genome stability, as well as a higher tolerance to genome instability. Furthermore, plant ontogenesis differs from that of animals in which tissue differentiation and telomerase silencing occur during early embryonic development, and the “telomere clock” in somatic cells may act as a preventive measure against carcinogenesis. This does not happen in plants, where growth and ontogenesis occur through the serial division of apical meristems consisting of a small group of stem cells that generate a linear series of cells, which differentiate into an array of cell types that make a shoot and root. Flowers, as generative plant organs, initiate from the shoot apical meristem in mature plants which is incompatible with the human-like developmental telomere shortening. In this review, we discuss differences between human and plant telomere biology and the implications for aging, genome stability, and cell and organism survival. In particular, we provide a comprehensive comparative overview of telomere proteins acting in humans and in Arabidopsis thaliana model plant, and discuss distinct epigenetic features of telomeric chromatin in these species.

28 July 2023 in Cell Reports
Verified
Journal Article
Open access
GTGianluca Teano
Gianluca Teano
LCLorenzo Concia
Lorenzo Concia
LWLéa Wolff
Léa Wolff
LCLéopold Carron
Léopold Carron
IBIvona Biocanin
Ivona Biocanin
FBFredy Barneche
Fredy Barneche
While the pivotal role of linker histone H1 in shaping nucleosome organization is well established, its functional interplays with chromatin factors along the epigenome are just starting to emerge. Here we show that, in Arabidopsis, as in mammals, H1 occupies Polycomb Repressive Complex 2 (PRC2) target genes where it favors chromatin condensation and H3K27me3 deposition. We further show that, contrasting with its conserved function in PRC2 activation at genes, H1 selectively prevents H3K27me3 accumulation at telomeres and large pericentromeric interstitial telomeric repeat (ITR) domains by restricting DNA accessibility to Telomere Repeat Binding (TRB) proteins, a group of H1-related Myb factors mediating PRC2 cis recruitment. This study provides a mechanistic framework by which H1 avoids the formation of gigantic H3K27me3-rich domains at telomeric sequences and contributes to safeguard nucleus architecture.

1 June 2008 in Phytochemistry
Verified
Journal Article
Closed access
IMIva Mozgova
Iva Mozgova
PSPetra Prochazkova Schrumpfova
Petra Prochazkova Schrumpfova
CHCtirad Hofr
Ctirad Hofr
JFJiří Fajkus
Jiří Fajkus

1 February 2008 in Plant Molecular Biology
Verified
Journal Article
Closed access
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EREva Růčková
Eva Růčková
JFJiří Friml
Jiří Friml
PSPetra Prochazkova Schrumpfova
Petra Prochazkova Schrumpfova
JFJiří Fajkus
Jiří Fajkus