The sequestration of carbon and nitrogen by clay-sized particles in soils is well established, and clay content or mineral surface area has been used to estimate the sequestration potential of soils. Here, via incubation of a sieved (<2 mm) topsoil with labelled litter, we find that only some of the clay-sized surfaces bind organic matter (OM). Surprisingly, <19% of the visible mineral areas show an OM attachment. OM is preferentially associated with organo-mineral clusters with rough surfaces. By combining nano-scale secondary ion mass spectrometry and isotopic tracing, we distinguish between new labelled and pre-existing OM and show that new OM is preferentially attached to already present organo-mineral clusters. These results, which provide evidence that only a limited proportion of the clay-sized surfaces contribute to OM sequestration, revolutionize our view of carbon sequestration in soils and the widely used carbon saturation estimates.

Soil formation is the result of a complex network of biological as well as chemical and physical processes. The role of soil microbes is of high interest, since they are responsible for most biological transformations and drive the development of stable and labile pools of carbon (C), nitrogen (N) and other nutrients, which facilitate the subsequent establishment of plant communities. Forefields of receding glaciers provide unique chronosequences of different soil development stages and are ideal ecosystems to study the interaction of bacteria, fungi and archaea with their abiotic environment. In this review we give insights into the role of microbes for soil development. The results presented are based on studies performed within the Collaborative Research Program DFG SFB/TRR 38 (http://www.tu-cottbus.de/ecosystem ) and are supplemented by data from other studies. The review focusses on the microbiology of major steps of soil formation. Special attention is given to the development of nutrient cycles on the formation of biological soil crusts (BSCs) and on the establishment of plant–microbe interactions.

Isotopic measurements showed that N ₂ O production during drought is unexpectedly dominated by denitrification of organic nitrogen.