Jakub Dybas

Dr. Jakub Dybas

Jagiellonian Centre for Experimental Therapeutics, Cracow, Poland
+1
orcid

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 February 2020 in Analytical Chemistry
Verified
Journal Article
Open access
SFStefano Fornasaro
Stefano Fornasaro
FAFatima Alsamad
Fatima Alsamad
MBMonica Baia
Monica Baia
LCLuís A.E. Batista de Carvalho
Luís A.E. Batista de Carvalho
CBClaudia Beleites
Claudia Beleites
ABAlois Bonifacio
Alois Bonifacio
Surface-enhanced Raman scattering (SERS) is a powerful and sensitive technique for the detection of fingerprint sig-nals of molecules and for the investigation of a series of surface chemical reactions. Many studies introduced quantita-tive applications of SERS in various fields and several SERS methods have been implemented for each specific applica-tion, ranging in performance characteristics, analytes used, instruments, and analytical matrices. In general, very few methods have been validated according to international guidelines. As a consequence, the application of SERS in high-ly-regulated environments is still considered risky and the perception of a poorly reproducible and insufficiently robust analytical technique has persistently retarded its routine implementation. Collaborative trials are a type of interlabora-tory study (ILS) frequently performed to ascertain the quality of a single analytical method. The idea of an ILS of quan-tification with SERS arose within the framework of Working Group 1 (WG1) of the COST Action BM1401 Ra-man4Clinics32 in an effort to overcome the problematic perception of quantitative SERS methods. Here we report the first interlaboratory SERS study ever conducted, involving 15 laboratories and 41 researchers. In this study we tried to define a methodology to assess the reproducibility and trueness of a quantitative SERS method, and to compare differ-ent methods. In our opinion, this is a first important step toward a “standardization” process of SERS protocols, not proposed by a single laboratory but by a larger community.

1 January 2022 in TrAC Trends in Analytical Chemistry
Verified
Journal Article
Open access
JDJakub Dybas
Jakub Dybas
FAFatih Celal Alçiçek
Fatih Celal Alçiçek
AWAleksandra Wajda
Aleksandra Wajda
MKMagdalena Kaczmarska
Magdalena Kaczmarska
AZAnna Zimna
Anna Zimna
KMKatarzyna Maria Marzec
Katarzyna Maria Marzec

26 June 2019 in Analytical Chemistry
Verified
Journal Article
Closed access
ABAneta Blat
Aneta Blat
JDJakub Dybas
Jakub Dybas
MKMagdalena Kaczmarska
Magdalena Kaczmarska
KCKarolina Chrabąszcz
Karolina Chrabąszcz
KBKatarzyna Bulat
Katarzyna Bulat
KMKatarzyna M. Marzec
Katarzyna M. Marzec

1 December 2016 in TrAC Trends in Analytical Chemistry
Verified
Journal Article
Closed access
JDJakub Dybas
Jakub Dybas
KMKatarzyna M. Marzec
Katarzyna M. Marzec
Marta Z. PaciaMarta Z. Pacia
Marta Z. Pacia
KKKamila Kochan
Kamila Kochan
KCKrzysztof Czamara
Krzysztof Czamara
AKAgnieszka Kaczor
Agnieszka Kaczor

18 December 2023 in The Analyst
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Journal Article
Open access
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TSTetiana Stepanenko
Tetiana Stepanenko
KSKamila Sofińska
Kamila Sofińska
NWNatalia Wilkosz
Natalia Wilkosz
JDJakub Dybas
Jakub Dybas
EWEwelina Wiercigroch
Ewelina Wiercigroch
KMKatarzyna M. Marzec
Katarzyna M. Marzec
Chemical characterization of extracellular microvesicles (REVs) and isolated membranes derived from red blood cells (RBCs) was carried out in a non-destructive and label-free manner with surface-enhanced Raman spectroscopy (SERS) and tip-enhanced Raman spectroscopy (TERS).

1 October 2020 in Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy
Verified
Journal Article
Open access
JDJakub Dybas
Jakub Dybas
MBMatthew J. Bokamper
Matthew J. Bokamper
KMKatarzyna M. Marzec
Katarzyna M. Marzec
PMPiotr Max
Piotr Max
Hemoglobin (Hb) is a key component of respiratory system and as such plays important role in human physiology. The studies of Hb's structure and functions are usually performed on cell-free protein; however, it has been shown that there are functionally relevant differences between isolated Hb and Hb present inside red blood cells (RBCs). It is clear that new experimental approaches are needed to understand the origin of these differences and to gain insight into the structure-function relationship of Hb within intact living cells. In this work we present a novel application of Resonance Raman spectroscopy to study heme active site of different forms of human Hb within living RBCs using laser excitation lines in resonance with their Soret absorption bands. These studies revealed that there are no significant changes in the disposition of the Fe-O-O fragment or the Fe-NHis linkage for Hb molecules enclosed in RBCs and these in free isolated states. However, some changes in the orientation of the heme vinyl groups were observed which might account for the differences in the protein activity and ligand affinity. This work highlights importance of protein-based studies and presents a new opportunity to translate these results to physiological cell systems.