Amanda Choo

Dr. Amanda Choo

orcid

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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12 November 2010 in Human Molecular Genetics
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Journal Article
Open access
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LOLouise V. O'Keefe
Louise V. O'Keefe
ACAlex Colella
Alex Colella
SDSonia Dayan
Sonia Dayan
QCQingwen Chen
Qingwen Chen
ACAmanda Choo
Amanda Choo
RRRobert I. Richards
Robert I. Richards
Common chromosomal fragile sites FRA3B and FRA16D are frequent sites of DNA instability in cancer, but their contribution to cancer cell biology is not yet understood. Genes that span these sites (FHIT and WWOX, respectively) are often perturbed (either increased or decreased) in cancer cells and both are able to suppress tumour growth. While WWOX has some tumour suppressor characteristics, its normal role and functional contribution to cancer has not been fully determined. We find that a significant proportion of Drosophila Wwox interactors identified by proteomics and microarray analyses have roles in aerobic metabolism. Functional relationships between Wwox and either CG6439/isocitrate dehydrogenase (Idh) or Cu–Zn superoxide dismutase (Sod) were confirmed by genetic interactions. In addition, altered levels of Wwox resulted in altered levels of endogenous reactive oxygen species. Wwox (like FHIT) contributes to pathways involving aerobic metabolism and oxidative stress, providing an explanation for the ‘non-classical tumour suppressor’ behaviour of WWOX. Fragile sites, and the genes that span them, are therefore part of a protective response mechanism to oxidative stress and likely contributors to the differences seen in aerobic glycolysis (Warburg effect) in cancer cells.

21 January 2021 in Nature Communications
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Journal Article
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CWChristopher M. Ward
Christopher M. Ward
RARoswitha A. Aumann
Roswitha A. Aumann
MWMark A. Whitehead
Mark A. Whitehead
KNKaterina Nikolouli
Katerina Nikolouli
GLGary Leveque
Gary Leveque
MSMarc F Schetelig
Marc F Schetelig
Mass releases of sterilized male insects, in the frame of sterile insect technique programs, have helped suppress insect pest populations since the 1950s. In the major horticultural pests Bactrocera dorsalis, Ceratitis capitata, and Zeugodacus cucurbitae, a key phenotype white pupae (wp) has been used for decades to selectively remove females before releases, yet the gene responsible remained unknown. Here, we use classical and modern genetic approaches to identify and functionally characterize causal wp − mutations in these distantly related fruit fly species. We find that the wp phenotype is produced by parallel mutations in a single, conserved gene. CRISPR/Cas9-mediated knockout of the wp gene leads to the rapid generation of white pupae strains in C. capitata and B. tryoni. The conserved phenotype and independent nature of wp − mutations suggest this technique can provide a generic approach to produce sexing strains in other major medical and agricultural insect pests.

1 June 2017 in Journal of Applied Entomology
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Journal Article
Closed access
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ACAmanda Choo
Amanda Choo
PCP. Crisp
P. Crisp
RSR. Saint
R. Saint
LOL. V. O'Keefe
L. V. O'Keefe
SBS. W. Baxter
S. W. Baxter

1 January 2017 in Insect Biochemistry and Molecular Biology
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Journal Article
Closed access
TSTristan Stevens
Tristan Stevens
SSSisi Song
Sisi Song
JBJohn Bruning
John Bruning
ACAmanda Choo
Amanda Choo
SBSimon Baxter
Simon Baxter

27 October 2014 in Oncogene
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Journal Article
Closed access
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ZSZ Shaukat
Z Shaukat
DLD Liu
D Liu
ACAmanda Choo
Amanda Choo
RHR Hussain
R Hussain
LOL O'Keefe
L O'Keefe
SGStephen Gregory
Stephen Gregory

16 January 2015 in Experimental Biology and Medicine
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Journal Article
Closed access
RRRobert I. Richards
Robert I. Richards
ACAmanda Choo
Amanda Choo
CLCheng Shoou Lee
Cheng Shoou Lee
SDSonia Dayan
Sonia Dayan
LOLouise O’kEefe
Louise O’kEefe
The WWOX gene spans the common chromosomal fragile site FRA16D that is located within a massive (780 kb) intron. The WWOX gene is very long, at 1.1 Mb, which may contribute to the very low abundance of the full-length 1.4 kb mRNA. Alternative splicing also accounts for a variety of aberrant transcripts, most of which are devoid of C-terminal sequences required for WWOX to act as an oxidoreductase. The mouse WWOX gene also spans a chromosomal fragile site implying some sort of functional relationship that confers a selective advantage. The encoded protein domains of WWOX are conserved through evolution (between humans and Drosophila melanogaster) and include WW domains, an NAD -binding site, short-chain dehydrogenase/reductase enzyme and nuclear compartmentalization signals. This homology has enabled functional analyses in D. melanogaster that demonstrate roles for WWOX in reactive oxygen species regulation and metabolism. Indeed the human WWOX gene is also responsive to altered metabolism. Cancer cells typically exhibit altered metabolism (Warburg effect). Many cancers exhibit FRA16D DNA instability that results in aberrant WWOX expression and is associated with poor prognosis for these cancers. It is therefore thought that aberrant WWOX expression contributes to the altered metabolism in cancer. In addition, others have found that a specific (low-expression) allele of WWOX genotype contributes to cancer predisposition.