Paul L. Fox

Dr. Paul L. Fox

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Research Focus & Metrics

Academic Career Length

29Years (1998-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 October 2003 in Cell
Verified
Journal Article
Closed access
BMBarsanjit Mazumder
Barsanjit Mazumder
PSPrabha Sampath
Prabha Sampath
VSVasudevan Seshadri
Vasudevan Seshadri
RMRatan K Maitra
Ratan K Maitra
PDPaul E DiCorleto
Paul E DiCorleto
PFPaul L. Fox
Paul L. Fox

21 February 2013 in EMBO Molecular Medicine
Verified
Journal Article
Open access
PDF file
PYPeng Yao
Peng Yao
PFPaul L. Fox
Paul L. Fox
Aminoacyl‐tRNA synthetases (ARSs) are essential and ubiquitous ‘house‐keeping’ enzymes responsible for charging amino acids to their cognate tRNAs and providing the substrates for global protein synthesis. Recent studies have revealed a role of multiple ARSs in pathology, and their potential use as pharmacological targets and therapeutic reagents. The ongoing discovery of genetic mutations in human ARSs is increasing exponentially and can be considered an important determinant of disease etiology. Several chemical compounds target bacterial, fungal and human ARSs as antibiotics or disease‐targeting medicines. Remarkably, ongoing exploration of noncanonical functions of ARSs has shown important contributions to control of angiogenesis, inflammation, tumourigenesis and other important physiopathological processes. Here, we summarize the roles of ARSs in human diseases and medicine, focusing on the most recent and exciting discoveries.

1 February 2009 in Nature
Verified
Journal Article
Open access
PDF file
PRPartho Sarothi Ray
Partho Sarothi Ray
JJJie Jia
Jie Jia
PYPeng Yao
Peng Yao
MMMithu Majumder
Mithu Majumder
MHMaria Hatzoglou
Maria Hatzoglou
PFPaul L. Fox
Paul L. Fox
RNA switches or riboswitches, involving the binding of small ligands to RNAs, are known to regulate gene expression in bacteria, fungi and plants, where they frequently respond to a deficit or excess of various metabolites or nutrients. Now an RNA switch has been identified in human cells. It is an element in the 3′ untranslated region of the mRNA encoding vascular endothelial growth factor (VEGF), a protein critical for blood vessel formation. The switchable mRNA can bind two different complexes, GAIT or hnRNP L. The binding of one induces a specific conformation that precludes binding of the other. Which factor is bound depends on environmental signals indicating inflammatory and hypoxic status. The switch may have evolved to maintain delivery of oxygen to hypoxic, inflammatory tissues, and may be an example of a type of protein-dependent RNA switch evolved to regulate gene expression in multicellular animals where the precise integration of disparate inputs is more important than a rapid response. The binding of small ligands to RNAs is a mechanism for regulation of gene expression in bacteria, fungi and plants. This work describes the first RNA switch to be identified in human cells. This element in the 3′ UTR of the VEGFA mRNA can bind two different complexes, GAIT or HNRNPL. The binding of one induces a specific conformation that precludes binding of the other. Which factor is bound depends on environmental signals indicating inflammatory and hypoxic status. Ligand binding to structural elements in the non-coding regions of messenger RNA modulates gene expression1,2. Ligands such as free metabolites or other small molecules directly bind and induce conformational changes in regulatory RNA elements known as riboswitches1,2,3,4. Other types of RNA switches are activated by complexed metabolites—for example, RNA-ligated metabolites such as aminoacyl-charged transfer RNA in the T-box system5, or protein-bound metabolites in the glucose- or amino-acid-stimulated terminator-anti-terminator systems6,7. All of these switch types are found in bacteria, fungi and plants8,9,10. Here we report an RNA switch in human vascular endothelial growth factor-A (VEGFA, also known as VEGF) mRNA 3′ untranslated region (UTR) that integrates signals from interferon (IFN)-γ and hypoxia to regulate VEGFA translation in myeloid cells. Analogous to riboswitches, the VEGFA 3′ UTR undergoes a binary conformational change in response to environmental signals. However, the VEGFA 3′ UTR switch is metabolite-independent, and the conformational change is dictated by mutually exclusive, stimulus-dependent binding of proteins, namely, the IFN-γ-activated inhibitor of translation complex11,12 and heterogeneous nuclear ribonucleoprotein L (HNRNPL, also known as hnRNP L). We speculate that the VEGFA switch represents the founding member of a family of signal-mediated, protein-dependent RNA switches that evolved to regulate gene expression in multicellular animals in which the precise integration of disparate inputs may be more important than the rapidity of response.

1 June 2014 in Cell
Verified
Journal Article
Closed access
SESandeepa M. Eswarappa
Sandeepa M. Eswarappa
APAlka A. Potdar
Alka A. Potdar
WKWilliam J. Koch
William J. Koch
YFYi Fan
Yi Fan
KVKommireddy Vasu
Kommireddy Vasu
PFPaul L. Fox
Paul L. Fox

1 July 2009 in Trends in Biochemical Sciences
Verified
Journal Article
Closed access
RMRupak Mukhopadhyay
Rupak Mukhopadhyay
JJJie Jia
Jie Jia
AAAbul Arif
Abul Arif
PRPartho Sarothi Ray
Partho Sarothi Ray
PFPaul L. Fox
Paul L. Fox

1 October 2014 in Cell
Verified
Journal Article
Closed access
JJJie Jia
Jie Jia
AAAbul Arif
Abul Arif
FTFulvia Terenzi
Fulvia Terenzi
BWBelinda Willard
Belinda Willard
EPEdward F. Plow
Edward F. Plow
PFPaul L. Fox
Paul L. Fox