Hongjie Yu

Prof. Hongjie Yu

orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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24 April 2020 in Science
Verified
Journal Article
Open access
PDF file
MCMatteo Chinazzi
Matteo Chinazzi
JDJessica T. Davis
Jessica T. Davis
MAMarco Ajelli
Marco Ajelli
CGCorrado Gioannini
Corrado Gioannini
MLMaria Litvinova
Maria Litvinova
AVAlessandro Vespignani
Alessandro Vespignani
Outbreak to pandemic: In response to global dispersion of severe acute respiratory syndrome–coronavirus 2 (SARS-CoV-2), quarantine measures have been implemented around the world. To understand how travel and quarantine influence the dynamics of the spread of this novel human virus, Chinazzi et al. applied a global metapopulation disease transmission model to epidemiological data from China. They concluded that the travel quarantine introduced in Wuhan on 23 January 2020 only delayed epidemic progression by 3 to 5 days within China, but international travel restrictions did help to slow spread elsewhere in the world until mid-February. Their results suggest that early detection, hand washing, self-isolation, and household quarantine will likely be more effective than travel restrictions at mitigating this pandemic. Science , this issue p. 395

26 June 2020 in Science
Verified
Journal Article
Open access
PDF file
JZJuanjuan Zhang
Juanjuan Zhang
MLMaria Litvinova
Maria Litvinova
Yuxia LiangYuxia Liang
Yuxia Liang
YWYan Wang
Yan Wang
WWWei Wang
Wei Wang
HYHongjie Yu
Hongjie Yu
Who and what next?: The coronavirus 2019 (COVID-19) pandemic has brought tighter restrictions on the daily lives of millions of people, but we do not yet understand what measures are the most effective. Zhang et al. modeled virus transmission in Wuhan, China, in February 2020, investigating the effects of interventions ranging from patient management to social isolation. Age-mixing patterns were estimated by contact surveys conducted in Wuhan and Shanghai at the beginning of February 2020. Once people reduced their average daily contacts from 14 to 20 down to 2, transmission rapidly fell below the epidemic threshold. The model also showed that preemptive school closures helped to reduce transmission, although alone they would not prevent a COVID-19 outbreak. Limiting human mixing to within households appeared to be the most effective measure. Science , this issue p. 1481

2 April 2020 in New England Journal of Medicine
Verified
Journal Article
Open access
PDF file
WLWeiyong Liu
Weiyong Liu
QZQi Zhang
Qi Zhang
JCJunbo Chen
Junbo Chen
RXRong Xiang
Rong Xiang
HSHuijuan Song
Huijuan Song
YLYingle Liu
Yingle Liu
A small number of cases of coronavirus disease 2019 (Covid-19) have been described in children,1,2 and our understanding of the spectrum of illness is limited.3 We conducted a retrospective analysis involving hospitalized children in Wuhan, China.

2 April 2020 in The Lancet Infectious Diseases
Verified
Journal Article
Closed access
JZJuanjuan Zhang
Juanjuan Zhang
MLMaria Litvinova
Maria Litvinova
WWWei Wang
Wei Wang
YWYan Wang
Yan Wang
XDXiaowei Deng
Xiaowei Deng
HYHongjie Yu
Hongjie Yu

15 January 2021 in Science
Verified
Journal Article
Open access
PDF file
KSKaiyuan Sun
Kaiyuan Sun
WWWei Wang
Wei Wang
LGLidong Gao
Lidong Gao
YWYan Wang
Yan Wang
KLKaiwei Luo
Kaiwei Luo
HYHongjie Yu
Hongjie Yu
Time and intimacy drive transmission: A minority of people infected with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) transmit most infections. How does this happen? Sun et al. reconstructed transmission in Hunan, China, up to April 2020. Such detailed data can be used to separate out the relative contribution of transmission control measures aimed at isolating individuals relative to population-level distancing measures. The authors found that most of the secondary transmissions could be traced back to a minority of infected individuals, and well over half of transmission occurred in the presymptomatic phase. Furthermore, the duration of exposure to an infected person combined with closeness and number of household contacts constituted the greatest risks for transmission, particularly when lockdown conditions prevailed. These findings could help in the design of infection control policies that have the potential to minimize both virus transmission and economic strain. Science , this issue p. eabe2424

28 March 2022 in Nature Genetics
Verified
Journal Article
Open access
PDF file
ZCZhiyuan Chen
Zhiyuan Chen
AAAndrew S. Azman
Andrew S. Azman
XCXinhua Chen
Xinhua Chen
JZJunyi Zou
Junyi Zou
YTYuyang Tian
Yuyang Tian
HYHongjie Yu
Hongjie Yu
Genomic surveillance has shaped our understanding of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants. We performed a global landscape analysis on SARS-CoV-2 genomic surveillance and genomic data using a collection of country-specific data. Here, we characterize increasing circulation of the Alpha variant in early 2021, subsequently replaced by the Delta variant around May 2021. SARS-CoV-2 genomic surveillance and sequencing availability varied markedly across countries, with 45 countries performing a high level of routine genomic surveillance and 96 countries with a high availability of SARS-CoV-2 sequencing. We also observed a marked heterogeneity of sequencing percentage, sequencing technologies, turnaround time and completeness of released metadata across regions and income groups. A total of 37% of countries with explicit reporting on variants shared less than half of their sequences of variants of concern (VOCs) in public repositories. Our findings indicate an urgent need to increase timely and full sharing of sequences, the standardization of metadata files and support for countries with limited sequencing and bioinformatics capacity.