Stephanie Colon-Santos

Dr. Stephanie Colon-Santos

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Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 April 2019 in ChemSystemsChem
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Journal Article
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SCStephanie Colon-Santos
Stephanie Colon-Santos
GCGeoffrey J. T. Cooper
Geoffrey J. T. Cooper
LCLee Cronin
Lee Cronin
One‐pot reactions of simple precursors, such as those found in the formose reaction or formamide condensation, continuously lead to combinatorial explosions in which simple building blocks capable of function exist, but are in insufficient concentration to self‐organize, adapt, and thus generate complexity. We set out to explore the effect of recursion on such complex mixtures by ‘seeding’ the product mixture into a fresh version of the reaction, with the inclusion of different mineral environments, over a number of reaction cycles. Through untargeted UPLC‐HRMS analysis of the mixtures we found that the overall number of products detected reduces as the number of cycles increases, as a result of recursively enhanced mineral environment selectivity, thus limiting the combinatorial explosion. This discovery demonstrates how the involvement of mineral surfaces with simple reactions could lead to the emergence of some building blocks found in RNA, ribose and uracil, under much simpler conditions that originally thought.

11 November 2021 in Life
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LVLena Vincent
Lena Vincent
SCStephanie Colon-Santos
Stephanie Colon-Santos
HCH. James Cleaves
H. James Cleaves
David BaumDavid Baum
David Baum
SMSarah Maurer
Sarah Maurer
“Prebiotic soup” often features in discussions of origins of life research, both as a theoretical concept when discussing abiological pathways to modern biochemical building blocks and, more recently, as a feedstock in prebiotic chemistry experiments focused on discovering emergent, systems-level processes such as polymerization, encapsulation, and evolution. However, until now, little systematic analysis has gone into the design of well-justified prebiotic mixtures, which are needed to facilitate experimental replicability and comparison among researchers. This paper explores principles that should be considered in choosing chemical mixtures for prebiotic chemistry experiments by reviewing the natural environmental conditions that might have created such mixtures and then suggests reasonable guidelines for designing recipes. We discuss both “assembled” mixtures, which are made by mixing reagent grade chemicals, and “synthesized” mixtures, which are generated directly from diversity-generating primary prebiotic syntheses. We discuss different practical concerns including how to navigate the tremendous uncertainty in the chemistry of the early Earth and how to balance the desire for using prebiotically realistic mixtures with experimental tractability and replicability. Examples of two assembled mixtures, one based on materials likely delivered by carbonaceous meteorites and one based on spark discharge synthesis, are presented to illustrate these challenges. We explore alternative procedures for making synthesized mixtures using recursive chemical reaction systems whose outputs attempt to mimic atmospheric and geochemical synthesis. Other experimental conditions such as pH and ionic strength are also considered. We argue that developing a handful of standardized prebiotic recipes may facilitate coordination among researchers and enable the identification of the most promising mechanisms by which complex prebiotic mixtures were “tamed” during the origin of life to give rise to key living processes such as self-propagation, information processing, and adaptive evolution. We end by advocating for the development of a public prebiotic chemistry database containing experimental methods (including soup recipes), results, and analytical pipelines for analyzing complex prebiotic mixtures.

1 January 2016 in Aerosol and Air Quality Research
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CVCarlos J. Valle-Di´az
Carlos J. Valle-Di´az
ETElvis Torres-Delgado
Elvis Torres-Delgado
SCStephanie Colon-Santos
Stephanie Colon-Santos
TLTaehyoung Lee
Taehyoung Lee
Jeff CollettJeff Collett
Jeff Collett
OMOlga L. Mayol-Bracero
Olga L. Mayol-Bracero

8 March 2019 in Communications Chemistry
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ISIrene Suárez-Marina
Irene Suárez-Marina
YAYousef Abul-Haija
Yousef Abul-Haija
RTRebecca Turk-MacLeod
Rebecca Turk-MacLeod
PGPiotr S. Gromski
Piotr S. Gromski
GCGeoffrey J. T. Cooper
Geoffrey J. T. Cooper
LCLee Cronin
Lee Cronin
Research on prebiotic chemistry and the origins of nucleic acids and proteins has traditionally been focussed on only one or the other. However, if nucleotides and amino acids co-existed on the early Earth, their mutual interactions and reactivity should be considered explicitly. Here we set out to investigate nucleotide/nucleoside formation by simple dehydration reactions of constituent building blocks (sugar, phosphate, and nucleobase) in the presence of different amino acids. We demonstrate the simultaneous formation of glycosidic bonds between ribose, purines, and pyrimidines under mild conditions without catalysts or activated reagents, as well as nucleobase exchange, in addition to the simultaneous formation of nucleotide and nucleoside isomers from several nucleobases. Clear differences in the distribution of glycosylation products are observed when glycine is present. This work demonstrates that reaction networks of nucleotides and amino acids should be considered when exploring the emergence of catalytic networks in the context of molecular evolution.

5 May 2017 in Angewandte Chemie International Edition
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GCGeoffrey J. T. Cooper
Geoffrey J. T. Cooper
Andrew SurmanAndrew Surman
Andrew Surman
JMJim McIver
Jim McIver
SCStephanie Colon-Santos
Stephanie Colon-Santos
PGPiotr S. Gromski
Piotr S. Gromski
LCLee Cronin
Lee Cronin
We designed and conducted a series of primordial‐soup Miller‐Urey style experiments with deuterated gases and reagents to compare the spark‐discharge products of a “deuterated world” with the standard reaction in the “hydrogenated world”. While the deuteration of the system has little effect on the distribution of amino acid products, significant differences are seen in other regions of the product‐space. Not only do we observe about 120 new species, we also see significant differences in their distribution if the two hydrogen isotope worlds are compared. Several isotopologue matches can be identified in both, but a large proportion of products have no equivalent in the corresponding isotope world with ca. 43 new species in the D world and ca. 39 new species in the H world. This shows that isotopic exchange (the addition of only one neutron) may lead to significant additional complexity in chemical space under otherwise identical reaction conditions.

18 August 2025 in Astrobiology
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SPScott M. Perl
Scott M. Perl
AMAshley E. Murphy
Ashley E. Murphy
CRChinmayee Govinda Raj
Chinmayee Govinda Raj
SCStephanie Colon-Santos
Stephanie Colon-Santos
MGMihaela Glamoclija
Mihaela Glamoclija
JLJon Lima-Zaloumis
Jon Lima-Zaloumis
Our understanding of crystalline structures within terrestrial planetary analog environments can shed light on how these features can be interpreted on rocky planets and icy moons in our solar system. The ability to distinguish biogenic and abiotic components within the mineral, crystal, and structural features allows us to inform future life detection missions, science payloads, and instrument measurement resolutions. Moreover, having these terrestrial reference measurements in a review format allows the measurement rationale to be understood in the context of mission concepts and geomicrobiological assessment of life in extreme environments. From 2020 to 2022, this team contributed to NASA’s Center for Life Detection, Life Detection Knowledge Base, where structural features in crystalline and crystal-centric sample analyses were reviewed and assessed for biogenic preservation potential. This article highlights the scientific rationale and astrobiological sample assessment of evaluation for crystal habits as a possible biosignature. This is to illustrate true and false positives of the standards of evidence for minerals and their associated crystal habits. Moreover, we illustrate how these efforts contribute to the overall assessment of this type of morphological evidence in extant and extinct life detection campaigns.