zhaojuan zhang

Dr. zhaojuan zhang

orcid

Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 October 2020 in Mathematics
Verified
Journal Article
Open access
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ZZzhaojuan zhang
zhaojuan zhang
WWWanliang Wang
Wanliang Wang
GPGaofeng Pan
Gaofeng Pan
In the era of big data, the size and complexity of the data are increasing especially for those stored in remote locations, and whose difficulty is further increased by the ongoing rapid accumulation of data scale. Real-world optimization problems present new challenges to traditional intelligent optimization algorithms since the traditional serial optimization algorithm has a high computational cost or even cannot deal with it when faced with large-scale distributed data. Responding to these challenges, a distributed cooperative evolutionary algorithm framework using Spark (SDCEA) is first proposed. The SDCEA can be applied to address the challenge due to insufficient computing resources. Second, a distributed quantum-behaved particle swarm optimization algorithm (SDQPSO) based on the SDCEA is proposed, where the opposition-based learning scheme is incorporated to initialize the population, and a parallel search is conducted on distributed spaces. Finally, the performance of the proposed SDQPSO is tested. In comparison with SPSO, SCLPSO, and SALCPSO, SDQPSO can not only improve the search efficiency but also search for a better optimum with almost the same computational cost for the large-scale distributed optimization problem. In conclusion, the proposed SDQPSO based on the SDCEA framework has high scalability, which can be applied to solve the large-scale optimization problem.

1 July 2014
Verified
Conference Paper
Closed access
XFXinggang Fan
Xinggang Fan
ZZzhaojuan zhang
zhaojuan zhang
Heng WangHeng Wang
Heng Wang
Event detection probability in WSN is complex under probabilistic sensor model. It is cumulative result of many sensors in the vicinity. Coverage hole in which the cumulative event detection probability is less than 90% can impair WSN monitoring capacity and sensibility. The mobility capable sensors can repair coverage holes by moving to appropriate locations. In this paper, we propose a hole repairing algorithm based on probabilistic sensor model(PHRA) to repair coverage hole. This algorithm finds coverage hole by cell scheme, the size and location of hole, schedules appropriate mobile sensors to repair hole, makes the hole completely covered at the least energy consumption and energy balancing in the process. Simulation result shows that this moving algorithm can effective eliminate coverage hole and get higher capacity of event detection.

11 November 2020 in BMC Bioinformatics
Verified
Journal Article
Open access
PDF file
ZZzhaojuan zhang
zhaojuan zhang
WWWanliang Wang
Wanliang Wang
RXRuofan Xia
Ruofan Xia
GPGaofeng Pan
Gaofeng Pan
JWJiandong Wang
Jiandong Wang
JTJijun Tang
Jijun Tang
Background: Reconstructing ancestral genomes is one of the central problems presented in genome rearrangement analysis since finding the most likely true ancestor is of significant importance in phylogenetic reconstruction. Large scale genome rearrangements can provide essential insights into evolutionary processes. However, when the genomes are large and distant, classical median solvers have failed to adequately address these challenges due to the exponential increase of the search space. Consequently, solving ancestral genome inference problems constitutes a task of paramount importance that continues to challenge the current methods used in this area, whose difficulty is further increased by the ongoing rapid accumulation of whole-genome data. Results: In response to these challenges, we provide two contributions for ancestral genome inference. First, an improved discrete quantum-behaved particle swarm optimization algorithm (IDQPSO) by averaging two of the fitness values is proposed to address the discrete search space. Second, we incorporate DCJ sorting into the IDQPSO (IDQPSO-Median). In comparison with the other methods, when the genomes are large and distant, IDQPSO-Median has the lowest median score, the highest adjacency accuracy, and the closest distance to the true ancestor. In addition, we have integrated our IDQPSO-Median approach with the GRAPPA framework. Our experiments show that this new phylogenetic method is very accurate and effective by using IDQPSO-Median. Conclusions: Our experimental results demonstrate the advantages of IDQPSO-Median approach over the other methods when the genomes are large and distant. When our experimental results are evaluated in a comprehensive manner, it is clear that the IDQPSO-Median approach we propose achieves better scalability compared to existing algorithms. Moreover, our experimental results by using simulated and real datasets confirm that the IDQPSO-Median, when integrated with the GRAPPA framework, outperforms other heuristics in terms of accuracy, while also continuing to infer phylogenies that were equivalent or close to the true trees within 5 days of computation, which is far beyond the difficulty level that can be handled by GRAPPA.