Prateek Prasanna

Dr. Prateek Prasanna

Stony Brook University
orcid

Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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18 May 2017 in Breast Cancer Research
Verified
Journal Article
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NBNathaniel M. Braman
Nathaniel M. Braman
MEMaryam Etesami
Maryam Etesami
PPPrateek Prasanna
Prateek Prasanna
CDChristina Dubchuk
Christina Dubchuk
HGHannah Gilmore
Hannah Gilmore
Anant MadabhushiAnant Madabhushi
Anant Madabhushi
In this study, we evaluated the ability of radiomic textural analysis of intratumoral and peritumoral regions on pretreatment breast cancer dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) to predict pathological complete response (pCR) to neoadjuvant chemotherapy (NAC). A total of 117 patients who had received NAC were retrospectively analyzed. Within the intratumoral and peritumoral regions of T1-weighted contrast-enhanced MRI scans, a total of 99 radiomic textural features were computed at multiple phases. Feature selection was used to identify a set of top pCR-associated features from within a training set (n = 78), which were then used to train multiple machine learning classifiers to predict the likelihood of pCR for a given patient. Classifiers were then independently tested on 39 patients. Experiments were repeated separately among hormone receptor-positive and human epidermal growth factor receptor 2-negative (HR+, HER2−) and triple-negative or HER2+ (TN/HER2+) tumors via threefold cross-validation to determine whether receptor status-specific analysis could improve classification performance. Among all patients, a combined intratumoral and peritumoral radiomic feature set yielded a maximum AUC of 0.78 ± 0.030 within the training set and 0.74 within the independent testing set using a diagonal linear discriminant analysis (DLDA) classifier. Receptor status-specific feature discovery and classification enabled improved prediction of pCR, yielding maximum AUCs of 0.83 ± 0.025 within the HR+, HER2− group using DLDA and 0.93 ± 0.018 within the TN/HER2+ group using a naive Bayes classifier. In HR+, HER2− breast cancers, non-pCR was characterized by elevated peritumoral heterogeneity during initial contrast enhancement. However, TN/HER2+ tumors were best characterized by a speckled enhancement pattern within the peritumoral region of nonresponders. Radiomic features were found to strongly predict pCR independent of choice of classifier, suggesting their robustness as response predictors. Through a combined intratumoral and peritumoral radiomics approach, we could successfully predict pCR to NAC from pretreatment breast DCE-MRI, both with and without a priori knowledge of receptor status. Further, our findings suggest that the radiomic features most predictive of response vary across different receptor subtypes.

7 October 2014 in IEEE Transactions on Automation Science and Engineering
Verified
Journal Article
Closed access
PPPrateek Prasanna
Prateek Prasanna
KDKristin J. Dana
Kristin J. Dana
NGNenad Gucunski
Nenad Gucunski
BBBasily B. Basily
Basily B. Basily
HLHung M. La
Hung M. La
HPHooman Parvardeh
Hooman Parvardeh
Detection of cracks on bridge decks is a vital task for maintaining the structural health and reliability of concrete bridges. Robotic imaging can be used to obtain bridge surface image sets for automated on-site analysis. We present a novel automated crack detection algorithm, the STRUM (spatially tuned robust multifeature) classifier, and demonstrate results on real bridge data using a state-of-the-art robotic bridge scanning system. By using machine learning classification, we eliminate the need for manually tuning threshold parameters. The algorithm uses robust curve fitting to spatially localize potential crack regions even in the presence of noise. Multiple visual features that are spatially tuned to these regions are computed. Feature computation includes examining the scale-space of the local feature in order to represent the information and the unknown salient scale of the crack. The classification results are obtained with real bridge data from hundreds of crack regions over two bridges. This comprehensive analysis shows a peak STRUM classifier performance of 95% compared with 69% accuracy from a more typical image-based approach. In order to create a composite global view of a large bridge span, an image sequence from the robot is aligned computationally to create a continuous mosaic. A crack density map for the bridge mosaic provides a computational description as well as a global view of the spatial patterns of bridge deck cracking. The bridges surveyed for data collection and testing include Long-Term Bridge Performance program's (LTBP) pilot project bridges at Haymarket, VA, USA, and Sacramento, CA, USA.

1 January 2018 in Lung Cancer
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Journal Article
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Rajat ThawaniRajat Thawani
Rajat Thawani
MMMichael McLane
Michael McLane
NBNiha Beig
Niha Beig
SGSoumya Ghose
Soumya Ghose
PPPrateek Prasanna
Prateek Prasanna
Anant MadabhushiAnant Madabhushi
Anant Madabhushi

5 April 2019 in JAMA Network Open
Verified
Journal Article
Open access
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NBNathaniel Braman
Nathaniel Braman
PPPrateek Prasanna
Prateek Prasanna
JWJon Whitney
Jon Whitney
Salendra Information SinghSalendra Information Singh
Salendra Information Singh
NBNiha Beig
Niha Beig
Anant MadabhushiAnant Madabhushi
Anant Madabhushi
Human epidermal growth factor receptor 2 (currently known as ERBB2, but referred to as HER2 in this study)–positive breast cancer is morphologically and genetically heterogeneous. Not all patients will fully benefit from HER2-targeted treatment, with less than 35% of patients initially responding to therapy with the monoclonal antibody trastuzumab.1,2 Molecular profiling via tests such as the PAM50 gene set can provide insight into treatment response by subcategorizing HER2-positive (HER2+) tumors into response-associated intrinsic molecular subtypes.3-8 The HER2-enriched (HER2-E) subtype, composing 40% to 50% of HER2+ breast cancers, is of particular therapeutic interest owing to its elevated rate of response to HER2-targeted therapy.3,9,10 Although molecular subtyping of HER2+ breast cancer is gradually gaining biological significance, no clinically accepted biomarkers are as yet available for prediction of response to anti-HER2 therapy.11 Therefore, there remains a need to develop novel approaches to estimate clinical outcomes of HER2-targeted therapy.

1 March 2019 in Radiology
Verified
Journal Article
Closed access
NBNiha Beig
Niha Beig
MKMohammadhadi Khorrami
Mohammadhadi Khorrami
MAMehdi Alilou
Mehdi Alilou
PPPrateek Prasanna
Prateek Prasanna
NBNathaniel Braman
Nathaniel Braman
AMAnant Madabhushi
Anant Madabhushi
Perinodular and intranodular radiomic features corresponding to texture and shape (radiomics) were evaluated to distinguish non-small cell lung cancer adenocarcinomas from benign granulomas at nonc... PurposeTo evaluate ability of radiomic (computer-extracted imaging) features to distinguish non-small cell lung cancer adenocarcinomas from granulomas at noncontrast CT.Materials and MethodsFor thi...

1 January 2020 in Cancer Immunology Research
Verified
Journal Article
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MKMohammadhadi Khorrami
Mohammadhadi Khorrami
PPPrateek Prasanna
Prateek Prasanna
AGAmit Gupta
Amit Gupta
PPPradnya Patil
Pradnya Patil
PVPriya D. Velu
Priya D. Velu
Anant MadabhushiAnant Madabhushi
Anant Madabhushi
No predictive biomarkers can robustly identify patients with non–small cell lung cancer (NSCLC) who will benefit from immune checkpoint inhibitor (ICI) therapies. Here, in a machine learning setting, we compared changes (“delta”) in the radiomic texture (DelRADx) of CT patterns both within and outside tumor nodules before and after two to three cycles of ICI therapy. We found that DelRADx patterns could predict response to ICI therapy and overall survival (OS) for patients with NSCLC. We retrospectively analyzed data acquired from 139 patients with NSCLC at two institutions, who were divided into a discovery set (D1 = 50) and two independent validation sets (D2 = 62, D3 = 27). Intranodular and perinodular texture descriptors were extracted, and the relative differences were computed. A linear discriminant analysis (LDA) classifier was trained with 8 DelRADx features to predict RECIST-derived response. Association of delta-radiomic risk score (DRS) with OS was determined. The association of DelRADx features with tumor-infiltrating lymphocyte (TIL) density on the diagnostic biopsies (n = 36) was also evaluated. The LDA classifier yielded an AUC of 0.88 ± 0.08 in distinguishing responders from nonresponders in D1, and 0.85 and 0.81 in D2 and D3. DRS was associated with OS [HR: 1.64; 95% confidence interval (CI), 1.22–2.21; P = 0.0011; C-index = 0.72). Peritumoral Gabor features were associated with the density of TILs on diagnostic biopsy samples. Our results show that DelRADx could be used to identify early functional responses in patients with NSCLC.