rahil gholamipoor

Ms. rahil gholamipoor

Mathematical Modeling of Biological Systems Institute, Heinrich Heine University, Düsseldorf, Germany

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 September 2020 in Sensors
Verified
Journal Article
Open access
PDF file
Malte JacobsenMalte Jacobsen
Malte Jacobsen
Till A. DembekTill A. Dembek
Till A. Dembek
AZAthanasios-Panagiotis Ziakos
Athanasios-Panagiotis Ziakos
rahil gholamipoorrahil gholamipoor
rahil gholamipoor
GKGuido Kobbe
Guido Kobbe
MSMelchior Seyfarth
Melchior Seyfarth
Atrial fibrillation (AF) is the most common arrhythmia and has a major impact on morbidity and mortality; however, detection of asymptomatic AF is challenging. This study aims to evaluate the sensitivity and specificity of non-invasive AF detection by a medical wearable. In this observational trial, patients with AF admitted to a hospital carried the wearable and an ECG Holter (control) in parallel over a period of 24 h, while not in a physically restricted condition. The wearable with a tight-fit upper armband employs a photoplethysmography technology to determine pulse rates and inter-beat intervals. Different algorithms (including a deep neural network) were applied to five-minute periods photoplethysmography datasets for the detection of AF. A total of 2306 h of parallel recording time could be obtained in 102 patients; 1781 h (77.2%) were automatically interpretable by an algorithm. Sensitivity to detect AF was 95.2% and specificity 92.5% (area under the receiver operating characteristics curve (AUC) 0.97). Usage of deep neural network improved the sensitivity of AF detection by 0.8% (96.0%) and specificity by 6.5% (99.0%) (AUC 0.98). Detection of AF by means of a wearable is feasible in hospitalized but physically active patients. Employing a deep neural network enables reliable and continuous monitoring of AF.

7 September 2022
Verified
Book Chapter
Closed access
PDF file
NRNima Rafiee
Nima Rafiee
rahil gholamipoorrahil gholamipoor
rahil gholamipoor
NANikolas Adaloglou
Nikolas Adaloglou
SJSimon Jaxy
Simon Jaxy
JRJulius Ramakers
Julius Ramakers
MKMarkus Kollmann
Markus Kollmann

1 June 2023 in bioRxiv
Verified
Preprint
Open access
PDF file
NRNima Rafiee
Nima Rafiee
rahil gholamipoorrahil gholamipoor
rahil gholamipoor
MKMarkus Kollmann
Markus Kollmann
Recent progress in computer-aided technologies has had a considerable impact on helping experts with a reliable and fast diagnosis of abnormal samples. In particular, self-supervised and self-distillation techniques have advanced automated out-of-distribution (OOD) detection in the image domain. Further improvements in OOD detection have been observed by including negative samples derived from shifting transformations of real images. In this work, we study different ways of creating negative samples for medical images and how effective they are when leveraging them in a self-supervised self-distillation framework. We investigate the impact of various types of negative examples by applying different shifting transformations on samples when they are derived from in-distribution training data, from an auxiliary dataset, or a combination of both. For the case of the auxiliary dataset, we compare the OOD detection performance when auxiliary samples are extracted from an indomain or an out-domain. Our approach uses only data belonging to healthy people during the training procedure and does not require any additional information from labels. We demonstrate the efficiency of our technique by comparing abnormality detection performance on diverse medical datasets, setting new benchmarks for pneumonia, polyp, and glaucoma detection from X-ray, colonoscopy, and ophthalmology images.

22 September 2023
Verified
Conference Paper
Open access
NRNima Rafiee
Nima Rafiee
rahil gholamipoorrahil gholamipoor
rahil gholamipoor
MKMarkus Kollmann
Markus Kollmann
Recent progress in computer-aided technologies has had a considerable impact on helping experts with a reliable and fast diagnosis of abnormal samples. In particular, self-supervised and self-distillation techniques have advanced automated out-of-distribution (OOD) detection in the image domain. Further improvements in OOD detection have been observed by including negative samples derived from shifting transformations of natural images. In this work, we study different ways of creating negative samples for medical images and how effective they are when leveraging them in a self-supervised self-distillation framework. We investigate the impact of various types of negative examples by applying different shifting transformations on samples when they are derived from in-distribution training data, an auxiliary dataset, or a combination of both. For the case of the auxiliary dataset, we compare the OOD detection performance when auxiliary samples are extracted from an in-domain or an out-domain. Our approach uses only data belonging to healthy people during the training procedure and does not require any additional information from labels. We demonstrate the efficiency of our technique by comparing abnormality detection performance on diverse medical datasets, setting new benchmarks for pneumonia, polyp, and glaucoma detection from X-ray, colonoscopy, and ophthalmology images.

3 November 2025 in bioRxiv
Verified
Preprint
Open access
Daniel BachurskiDaniel Bachurski
Daniel Bachurski
rahil gholamipoorrahil gholamipoor
rahil gholamipoor
YBYong-Jia Bu
Yong-Jia Bu
PHPatrick Hoelker
Patrick Hoelker
LWLisa Wessendorf
Lisa Wessendorf
NANima Abedpour
Nima Abedpour
Extracellular vesicles (EVs) mediate tumor-immune cell communication by carrying protein cargo that can immediately modulate signaling and antigen presentation. Yet mapping the uptake of primary EV proteomes by human immune cells at single-cell resolution has been constrained by a lack of labeling strategies. We show here that TeLEV, a tellurium-based metabolic mass tagging approach that incorporates L-2-tellurienylalanine (TePhe) into EV proteomes, can produce a biologically rare monoisotopic signal, which is detectable by mass cytometry, imaging mass cytometry, and nanoscale SIMS, without perturbing EV morphology, yield, or proteome composition. We applied TeLEV to label primary malignant B-cell-derived EVs (MBC-EVs) from chronic lymphocytic leukemia (CLL) patients and could follow EV uptake by distinct cell populations of healthy donor peripheral blood mononuclear cells. MBC-EV uptake occurred predominantly in cells of myeloid lineages. In direct control experiments with matched secreted proteins, a machine learning approach identified CD123, CD127, and CD25 as key markers distinguishing primary MBC-EV recipients from matched secreted protein recipient cells. Nanoscale imaging enabled localization of EV-delivered proteins within heterochromatin, whereas Te-labeled secreted proteins accumulated in the cytoplasm of recipient cells. We then generated a pan-immune EV uptake atlas by tracing the uptake of primary and cell-line EVs from nine cell lines and six donors with chronic lymphocytic leukemia into 2,977,094 recipient cells across 43 cell types and subpopulations. We found that the uptake of MBC-EVs by myeloid recipients induced monocyte-derived dendritic-cell polarization characterized by the co-expression of the interleukin-receptor triad (IL-RT: CD123, CD127, CD25) identified above. Time-resolved EV uptake analysis showed a rapid, transient expression of CD123/CD127 followed by CD25, both tightly coupled to MBC-EV uptake by myeloid cells. The intensity of IL-RT expression correlated with that of PD-L1 and BCL-2. Using different STAT degraders to bidirectionally modify the EV-induced STAT5 signal, we observed that MBC-EV uptake and IL-RT, PD-L1, and BCL-2 expression increased with STAT3 degradation and decreased with STAT5 degradation. To investigate the functional consequences of the MBC-EV-induced changes, we showed that MBC-EVs in the presence of IL-2 induced a high-CD25 immune state with low cytotoxic and high B cell proliferation. Taken together, TeLEV represents a novel tool for single-cell tracking of EV proteomes, revealing STAT5-dependent immune remodeling of recipient cells.