University of Winnipeg

Dr. University of Winnipeg

1. Department of Biology, The University of Winnipeg, Winnipeg, MB R3B 2G3, Canada
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Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 June 2017 in Frontiers in Immunology
Verified
Journal Article
Open access
DUDaniel Ikenna Udenwobele
Daniel Ikenna Udenwobele
RSRuey-Chyi Su
Ruey-Chyi Su
SGSara V. Good
Sara V. Good
TBTerry Blake Ball
Terry Blake Ball
SSShailly Varma Shrivastav
Shailly Varma Shrivastav
University of WinnipegUniversity of Winnipeg
University of Winnipeg
Increasing biochemical and genetic evidence confirms that myristoylation is an evolutionary conserved process of lipid modification in many eukaryotic and viral proteins. The discovery that the N-terminal blocking group of cyclic AMP-dependent protein kinase is a myristic acid, some 33 years ago, led to the birth of the field of ‘myristoylation’, dedicated to understanding the significance of protein myristoylation. Although the field is in its infancy, an increasing number of studies have appeared addressing the mechanisms and significance of N-myristoylation in various aspects of cellular signaling. N-Myristoylation is known to occur in mammalian, plant, viral and fungal proteins. Many proteins involved in a variety of signal cascades and cellular differentiation are myristoylated. These include the catalytic subunit of cAMP-dependent protein kinase, the β-subunit of calcineurin, the α-subunit of several G-proteins, the cellular and transforming forms of pp60src. Given the indispensible role of myristoylation in cellular functions, in this review, we examine the myriad functional implications of myristoylation with respect to immune function and regulation.

1 December 2016 in Canadian Journal of Zoology
Verified
Journal Article
Closed access
LMLiam P McGuire
Liam P McGuire
KMKristina Ashley Muise
Kristina Ashley Muise
University of WinnipegUniversity of Winnipeg
University of Winnipeg
CWCraig K.R Willis
Craig K.R Willis
During autumn, temperate bats must deposit fat stores for hibernation. Populations at high latitudes face four challenges: a shorter active season and shorter nights during the active season (less time to accumulate fat), a longer hibernation period (larger fat store needed), and colder nights (reduced prey availability). Mating also occurs during the prehibernation period, placing time constraints for mating and fattening on northern populations. We tested the hypothesis that these factors constrain prehibernation foraging in northern populations of little brown bats (Myotis lucifugus (Le Conte, 1831)). We measured plasma triglyceride concentration to study prehibernation fueling rates of a population near the northern range limit of the species and compared our results with previously published results from a more southern population. In contrast to bats at the lower latitude, we found consistently low concentrations of plasma triglycerides, indicating a low fuelling rate throughout the prehibernation period. However, despite an apparently low fuelling rate, bats achieved a substantially greater body mass. The discrepancy between populations suggests that environmental constraints lead northern populations to employ different behavioural or physiological strategies to prepare for hibernation.

Verified
Journal Article
Open access
PDF file
ABApurva Bhardwaj
Apurva Bhardwaj
KPKumar Alok Pathak
Kumar Alok Pathak
University of WinnipegUniversity of Winnipeg
University of Winnipeg
SSShailly Varma Shrivastav
Shailly Varma Shrivastav
Insulin-like growth factor (IGF) binding protein-3 (IGFBP-3) is an essential protein that regulates cellular processes such as cell proliferation, apoptosis, and differentiation. It is known to bind with several proteins to carry out various cellular functions. In this study, we report for the first time that IGFBP-3 is a histone 3 (H3) binding protein. Sub-cellular fractionation was performed to separate into cytosolic fraction, nucleic acid binding protein fraction and insoluble nuclear fraction. Using ligand blot analysis, we identified a ~15 kDa protein that can interact with IGFBP-3 in the insoluble nuclear fraction. The 15 kDa protein was confirmed as histone 3 by far-Western blot analysis and co-immunoprecipitation experiments. A dot-blot experiment further validated the binding of IGFBP-3 with H3. The intensity of IGFBP-3 on dot-blot showed a proportional increase with H3 concentrations between 2.33 pmol–37.42 pmol. Our results support the presence of protein-protein interaction between IGFBP-3 and H3. The physical binding between IGFBP-3 and H3 could indicate its yet another cellular role in regulating the chromatin remodeling for gene transcription.

26 March 2018 in PLOS ONE
Verified
Journal Article
Open access
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RCRanjit Chauhan
Ranjit Chauhan
DDDavid Datzkiw
David Datzkiw
SSShailly Varma Shrivastav
Shailly Varma Shrivastav
University of WinnipegUniversity of Winnipeg
University of Winnipeg
Protein myristoylation is a key protein modification carried out by N-Myristoyltransferase (NMT) after Methionine aminopeptidase 2 (MetAP2) removes methionine from the amino-terminus of the target protein. Protein myristoylation by NMT augments several signaling pathways involved in a myriad of cellular processes, including developmental pathways and pathways that when dysregulated lead to cancer or immune dysfunction. The emerging evidence pointing to NMT-mediated myristoylation as a major cellular regulator underscores the importance of understanding the framework of this type of signaling event. Various studies have investigated the role that myristoylation plays in signaling dysfunction by examining differential gene or protein expression between normal and diseased states, such as cancers or following HIV-1 infection, however no study exists that addresses the role of microRNAs (miRNAs) in the regulation of myristoylation. By performing a large scale bioinformatics and functional analysis of the miRNAs that target key genes involved in myristoylation (NMT1, NMT2, MetAP2), we have narrowed down a list of promising candidates for further analysis. Our condensed panel of miRNAs identifies 35 miRNAs linked to cancer, 21 miRNAs linked to developmental and immune signaling pathways, and 14 miRNAs linked to infectious disease (primarily HIV). The miRNAs panel that was analyzed revealed several NMT-targeting mRNAs (messenger RNA) that are implicated in diseases associated with NMT signaling alteration, providing a link between the realms of miRNA and myristoylation signaling. These findings verify miRNA as an additional facet of myristoylation signaling that must be considered to gain a full perspective. This study provides the groundwork for future studies concerning NMT-transcript-binding miRNAs, and will potentially lead to the development of new diagnostic/prognostic biomarkers and therapeutic targets for several important diseases.

7 January 2022 in Annals of Surgery Open
Verified
Journal Article
Open access
TRTharmini Lnp Rathinagopal
Tharmini Lnp Rathinagopal
SBShiv Bsc Bhanot
Shiv Bsc Bhanot
SYSergey Yegrov
Sergey Yegrov
JMJordan Bsc Min
Jordan Bsc Min
NHNan Hu
Nan Hu
University of WinnipegUniversity of Winnipeg
University of Winnipeg
Background: Colorectal cancer is the second leading cause of cancer-related deaths. This study demonstrates the utility of a simple blood test with high sensitivity and specificity for colorectal adenomatous polyps and cancer. A simple blood test with high sensitivity and specificity for adenomas would help identify individuals for a follow-up colonoscopy during which any adenomatous polyps found could be removed, thus preventing colorectal cancer (CRC). Methods: We determined the H-score by using immunohistochemical analyses of N-myristoyltransferase 2 (NMT2) in peripheral blood mononuclear cells (PBMC) isolated from the blood. We determined the sensitivity and specificity of the NMT2-based blood test in identifying colorectal adenomatous polyps and cancer. Design: All experimental procedures were performed by research personnel blinded to the colonoscopy status of the participants. Setting: In this cohort study, participants were recruited from those coming for an outpatient colonoscopy at a referral center. Participants: PBMC were collected from 74 subjects at the Health Sciences Centre, Winnipeg, Canada. Samples were collected from colonoscopy patients prior to colonoscopy. All 74 subjects were included in CRC vs. non-CRC analysis, whereas only 70 subjects were analyzed for colorectal adenomatous polyps and cancer versus individuals with no evidence of disease and non-adenomatous polyps. NMT2 expression was tested in samples by immunohistochemistry. Results: The expression of NMT2 was significantly higher in PBMC of subjects with colorectal adenomatous polyps and cancer (n = 34) compared with individuals with non-adenomatous polyps or no evidence of disease (n = 36) (P < 0.0001). The test had an overall sensitivity of 91% (95% confidence intervals: 84.49–97.80) and specificity of 81% (95% confidence intervals: 71.28–89.83) in detecting colorectal adenomatous polyps and cancer (all stages). Conclusions: Our results suggest that the sensitivity of NMT2 in detecting adenomatous polyps is high (91%). A simple blood-based CRC screening test using NMT2 expression detects colorectal adenomatous polyps and cancer with high sensitivity and specificity has the potential of increasing the compliance for CRC screening as has been reported for other blood-based CRC screening tests.

25 October 2020 in bioRxiv
Verified
Preprint
Open access
PDF file
DRDean Reddick
Dean Reddick
DUDaniel I Udenwobele
Daniel I Udenwobele
DDDavid Datzkiw
David Datzkiw
RMRevanti Mukherjee
Revanti Mukherjee
SSShailly Varma Shrivastav
Shailly Varma Shrivastav
University of WinnipegUniversity of Winnipeg
University of Winnipeg
N-myristoylation refers to the attachment of a 14-carbon fatty acid onto the N-terminal glycine residue of a target protein. The myristoylation reaction, catalyzed by N-myristoyltrasnferase (NMT), is essential for regulating cellular activities such as signal transduction, proliferation, migration, differentiation, and transformation. Although a considerable amount of research is performed on the overexpression of NMT in pathogenic conditions, a fundamental knowledge gap exists on the evolution of NMT and the functional impact of myristoylation for normal cellular development and functions. We performed evolutionary analyses of the NMT gene and found that most non-vertebrates harbor a single nmt gene and all vertebrates examined harbor two genes; nmt1 and nmt2. For the first time, we report that teleosts harbor two copies of nmt1, named nmt1a and nmt1b. We traced the evolutionary history of the chromosomal fragments hosting NMT1 and NMT2 in humans and found that NMT1 and NMT2 trace back to a single vertebrate ancestral chromosome. We also report the presence of putative nuclear localization sequence (NLS) and amino acid residues flanking NLS. The presence of phosphorylatable amino acid residues flanking the NLS suggests that nuclear localization of NMT is regulated by phosphorylation. The nuclear localization of NMT suggest its potential role in gene transcription.