Malathy Palayam

Dr. Malathy Palayam

University of California-Davis
orcid

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 January 2023 in Phytochemistry Reviews
Verified
Journal Article
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AGAngelica M. Guercio
Angelica M. Guercio
MPMalathy Palayam
Malathy Palayam
NSNitzan Shabek
Nitzan Shabek
Strigolactones (SLs) are a unique and novel class of phytohormones that regulate numerous processes of growth and development in plants. Besides their endogenous functions as hormones, SLs are exuded by plant roots to stimulate critical interactions with symbiotic fungi but can also be exploited by parasitic plants to trigger their seed germination. In the past decade, since their discovery as phytohormones, rapid progress has been made in understanding the SL biosynthesis and signaling pathway. Of particular interest are the diversification of natural SLs and their exact mode of perception, selectivity, and hydrolysis by their dedicated receptors in plants. Here we provide an overview of the emerging field of SL perception with a focus on the diversity of canonical, non-canonical, and synthetic SL probes. Moreover, this review offers useful structural insights into SL perception, the precise molecular adaptations that define receptor-ligand specificities, and the mechanisms of SL hydrolysis and its attenuation by downstream signaling components.

9 July 2024 in The Plant Cell
Verified
Journal Article
Open access
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NENancy A Eckardt
Nancy A Eckardt
TATamar Avin-Wittenberg
Tamar Avin-Wittenberg
DBDiane Bassham
Diane Bassham
PCPoyu Chen
Poyu Chen
QCQian Chen
Qian Chen
HZHongtao Zhang
Hongtao Zhang
Proteolysis, including post-translational proteolytic processing as well as protein degradation and amino acid recycling, is an essential component of the growth and development of living organisms. In this article, experts in plant proteolysis pose and discuss compelling open questions in their areas of research. Topics covered include the role of proteolysis in the cell cycle, DNA damage response, mitochondrial function, the generation of N-terminal signals (degrons) that mark many proteins for degradation (N-terminal acetylation, the Arg/N-degron pathway, and the chloroplast N-degron pathway), developmental and metabolic signaling (photomorphogenesis, abscisic acid and strigolactone signaling, sugar metabolism, and postharvest regulation), plant responses to environmental signals (endoplasmic-reticulum-associated degradation, chloroplast-associated degradation, drought tolerance, and the growth-defense trade-off), and the functional diversification of peptidases. We hope these thought-provoking discussions help to stimulate further research.

17 January 2025 in Science
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Journal Article
Closed access
AZAnqi Zhou
Anqi Zhou
AKAnnalise Kane
Annalise Kane
SWSheng Wu
Sheng Wu
KWKaibiao Wang
Kaibiao Wang
MSMichell Santiago
Michell Santiago
YLYanran Li
Yanran Li
Strigolactones (SLs) are methylbutenolide molecules derived from β-carotene through an intermediate carlactonoic acid (CLA). Canonical SLs act as signals to microbes and plants, whereas noncanonical SLs are primarily plant hormones. The cytochrome P450 CYP722C catalyzes a critical step, converting CLA to canonical SLs in most angiosperms. Using synthetic biology, we investigated the function of CYP722A , an evolutionary predecessor of CYP722C . CYP722A converts CLA into 16-hydroxy-CLA (16-OH-CLA), a noncanonical SL detected exclusively in the shoots of various flowering plants. 16-OH-CLA application restores control of shoot branching to SL-deficient mutants in Arabidopsis thaliana and is perceived by the SL signaling pathway. We hypothesize that biosynthesis of 16-OH-CLA by CYP722A was a metabolic stepping stone in the evolution of canonical SLs that mediate rhizospheric signaling in many flowering plants.

1 August 2024 in Nature Communications
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Journal Article
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MPMalathy Palayam
Malathy Palayam
LYLinyi Yan
Linyi Yan
UNUgrappa Nagalakshmi
Ugrappa Nagalakshmi
AGAmelia K. Gilio
Amelia K. Gilio
DCDavid Cornu
David Cornu
NSNitzan Shabek
Nitzan Shabek
Phytohormone levels are regulated through specialized enzymes, participating not only in their biosynthesis but also in post-signaling processes for signal inactivation and cue depletion. Arabidopsis thaliana (At) carboxylesterase 15 (CXE15) and carboxylesterase 20 (CXE20) have been shown to deplete strigolactones (SLs) that coordinate various growth and developmental processes and function as signaling molecules in the rhizosphere. Here, we elucidate the X-ray crystal structures of AtCXE15 (both apo and SL intermediate bound) and AtCXE20, revealing insights into the mechanisms of SL binding and catabolism. The N-terminal regions of CXE15 and CXE20 exhibit distinct secondary structures, with CXE15 characterized by an alpha helix and CXE20 by an alpha/beta fold. These structural differences play pivotal roles in regulating variable SL hydrolysis rates. Our findings, both in vitro and in planta, indicate that a transition of the N-terminal helix domain of CXE15 between open and closed forms facilitates robust SL hydrolysis. The results not only illuminate the distinctive process of phytohormone breakdown but also uncover a molecular architecture and mode of plasticity within a specific class of carboxylesterases.

9 February 2022 in Molecules
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Journal Article
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Manohar RadhakrishnanManohar Radhakrishnan
Manohar Radhakrishnan
MPMalathy Palayam
Malathy Palayam
Ammar AltemimiAmmar Altemimi
Ammar Altemimi
KLKarthik Lakshminarayanan
Karthik Lakshminarayanan
KGKrishnasamy Gunasekaran
Krishnasamy Gunasekaran
GLGnanappazham Lakshmanan
Gnanappazham Lakshmanan
A 24 kDa leucine-rich protein from ion exchange fractions of Solanum trilobatum, which has anti-bacterial activity against both the Gram-negative Vibrio cholerae and Gram-positive Staphylococcus aureus bacteria has been purified. In this study, mass spectrometry analysis identified the leucine richness and found a luminal binding protein (LBP). Circular dichroism suggests that the protein was predominantly composed of α- helical contents of its secondary structure. Scanning electron microscopy visualized the characteristics and morphological and structural changes in LBP-treated bacterium. Further in vitro studies confirmed that mannose-, trehalose- and raffinose-treated LBP completely inhibited the hemagglutination ability towards rat red blood cells. Altogether, these studies suggest that LBP could bind to sugar moieties which are abundantly distributed on bacterial surface which are essential for maintaining the structural integrity of bacteria. Considering that Solanum triolbatum is a well-known medicinal and edible plant, in order to shed light on its ancient usage in this work, an efficient anti-microbial protein was isolated, characterized and its in vitro functional study against human pathogenic bacteria was evaluated.

10 August 2022 in Journal of Structural Biology
Verified
Journal Article
Closed access
FSFuai Sun
Fuai Sun
MPMalathy Palayam
Malathy Palayam
NSNitzan Shabek
Nitzan Shabek