Namdoo Kim

Prof. Namdoo Kim

orcid

Research Focus & Metrics

Academic Career Length

19Years (2008-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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31 October 2016 in Nature Methods
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BBBryce T Bajar
Bryce T Bajar
ALAmy J Lam
Amy J Lam
RBRyan K Badiee
Ryan K Badiee
YOYoung-Hee Oh
Young-Hee Oh
JCJun Chu
Jun Chu
Michael LinMichael Lin
Michael Lin

13 July 2020 in Nature Methods
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YSYichi Su
Yichi Su
JWJoel R. Walker
Joel R. Walker
YPYunhee Park
Yunhee Park
TSThomas P. Smith
Thomas P. Smith
LLLan Xiang Liu
Lan Xiang Liu
Michael LinMichael Lin
Michael Lin

15 September 2017 in Nature Communications
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LDLiting Duan
Liting Duan
JHJen Hope
Jen Hope
QOQunxiang Ong
Qunxiang Ong
HLHsin-Ya Lou
Hsin-Ya Lou
NKNamdoo Kim
Namdoo Kim
BCBianxiao Cui
Bianxiao Cui
Arabidopsis cryptochrome 2 (CRY2) can simultaneously undergo light-dependent CRY2–CRY2 homo-oligomerization and CRY2–CIB1 hetero-dimerization, both of which have been widely used to optically control intracellular processes. Applications using CRY2–CIB1 interaction desire minimal CRY2 homo-oligomerization to avoid unintended complications, while those utilizing CRY2–CRY2 interaction prefer robust homo-oligomerization. However, selecting the type of CRY2 interaction has not been possible as the molecular mechanisms underlying CRY2 interactions are unknown. Here we report CRY2–CIB1 and CRY2–CRY2 interactions are governed by well-separated protein interfaces at the two termini of CRY2. N-terminal charges are critical for CRY2–CIB1 interaction. Moreover, two C-terminal charges impact CRY2 homo-oligomerization, with positive charges facilitating oligomerization and negative charges inhibiting it. By engineering C-terminal charges, we develop CRY2high and CRY2low with elevated or suppressed oligomerization respectively, which we use to tune the levels of Raf/MEK/ERK signaling. These results contribute to our understanding of the mechanisms underlying light-induced CRY2 interactions and enhance the controllability of CRY2-based optogenetic systems.

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NKNamdoo Kim
Namdoo Kim
Hyuck Jin LeeHyuck Jin Lee
Hyuck Jin Lee
Redox-active metal ions, Cu(I/II) and Fe(II/III), are essential biological molecules for the normal functioning of the brain, including oxidative metabolism, synaptic plasticity, myelination, and generation of neurotransmitters. Dyshomeostasis of these redox-active metal ions in the brain could cause Alzheimer’s disease (AD). Thus, regulating the levels of Cu(I/II) and Fe(II/III) is necessary for normal brain function. To control the amounts of metal ions in the brain and understand the involvement of Cu(I/II) and Fe(II/III) in the pathogenesis of AD, many chemical agents have been developed. In addition, since toxic aggregates of amyloid-β (Aβ) have been proposed as one of the major causes of the disease, the mechanism of clearing Aβ is also required to be investigated to reveal the etiology of AD clearly. Multiple metalloenzymes (e.g., neprilysin, insulin-degrading enzyme, and ADAM10) have been reported to have an important role in the degradation of Aβ in the brain. These amyloid degrading enzymes (ADE) could interact with redox-active metal ions and affect the pathogenesis of AD. In this review, we introduce and summarize the roles, distributions, and transportations of Cu(I/II) and Fe(II/III), along with previously invented chelators, and the structures and functions of ADE in the brain, as well as their interrelationships.

8 November 2008 in Journal of the American Chemical Society
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SLSang Hak Lee
Sang Hak Lee
NKNamdoo Kim
Namdoo Kim
DHDong Gyun Ha
Dong Gyun Ha
SKSeong Keun Kim
Seong Keun Kim

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Ha Vy Thi VoHa Vy Thi Vo
Ha Vy Thi Vo
YNYen Thi Nguyen
Yen Thi Nguyen
NKNamdoo Kim
Namdoo Kim
Hyuck Jin LeeHyuck Jin Lee
Hyuck Jin Lee
Fat-soluble vitamins (vitamin A, D, E, and K) assume a pivotal role in maintaining human homeostasis by virtue of their enzymatic functions. The daily inclusion of these vitamins is imperative to the upkeep of various physiological processes including vision, bone health, immunity, and protection against oxidative stress. Current research highlights fat-soluble vitamins as potential therapeutics for human diseases, especially cancer. Fat-soluble vitamins exert their therapeutic effects through multiple pathways, including regulation of matrix metalloproteinases’ (MMPs) expression and enzymatic activity. As MMPs have been reported to be involved in the pathology of various diseases, such as cancers, cardiovascular diseases, and neurological disorders, regulating the expression and/or activity of MMPs could be considered as a potent therapeutic strategy. Here, we summarize the properties of fat-soluble vitamins and their potential as promising candidates capable of effectively modulating MMPs through multiple pathways to treat human diseases.