Vladimir Rybkin

Dr. Vladimir Rybkin

University of Zurich
orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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19 May 2020 in The Journal of Chemical Physics
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Thomas KühneThomas Kühne
Thomas Kühne
MIMarcella Iannuzzi
Marcella Iannuzzi
MBMauro Del Ben
Mauro Del Ben
VRVladimir Rybkin
Vladimir Rybkin
PSPatrick Seewald
Patrick Seewald
JHJürg Hutter
Jürg Hutter
CP2K is an open source electronic structure and molecular dynamics software package to perform atomistic simulations of solid-state, liquid, molecular, and biological systems. It is especially aimed at massively parallel and linear-scaling electronic structure methods and state-of-the-art ab initio molecular dynamics simulations. Excellent performance for electronic structure calculations is achieved using novel algorithms implemented for modern high-performance computing systems. This review revisits the main capabilities of CP2K to perform efficient and accurate electronic structure simulations. The emphasis is put on density functional theory and multiple post–Hartree–Fock methods using the Gaussian and plane wave approach and its augmented all-electron extension.

23 September 2013 in WIREs Computational Molecular Science
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KAKestutis Aidas
Kestutis Aidas
CACelestino Angeli
Celestino Angeli
KBKeld L. Bak
Keld L. Bak
VBVebjørn Bakken
Vebjørn Bakken
RBRadovan Bast
Radovan Bast
HÅHans Ågren
Hans Ågren
Dalton is a powerful general‐purpose program system for the study of molecular electronic structure at the Hartree–Fock, Kohn–Sham, multiconfigurational self‐consistent‐field, Møller–Plesset, configuration‐interaction, and coupled‐cluster levels of theory. Apart from the total energy, a wide variety of molecular properties may be calculated using these electronic‐structure models. Molecular gradients and Hessians are available for geometry optimizations, molecular dynamics, and vibrational studies, whereas magnetic resonance and optical activity can be studied in a gauge‐origin‐invariant manner. Frequency‐dependent molecular properties can be calculated using linear, quadratic, and cubic response theory. A large number of singlet and triplet perturbation operators are available for the study of one‐, two‐, and three‐photon processes. Environmental effects may be included using various dielectric‐medium and quantum‐mechanics/molecular‐mechanics models. Large molecules may be studied using linear‐scaling and massively parallel algorithms. Dalton is distributed at no cost from http://www.daltonprogram.org for a number of UNIX platforms.This article is categorized under: Software > Quantum Chemistry

3 February 2021 in Nature Communications
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JLJinggang Lan
Jinggang Lan
VKVenkat Kapil
Venkat Kapil
PGPiero Gasparotto
Piero Gasparotto
MCMichele Ceriotti
Michele Ceriotti
MIMarcella Iannuzzi
Marcella Iannuzzi
VRVladimir Rybkin
Vladimir Rybkin
The nature of the bulk hydrated electron has been a challenge for both experiment and theory due to its short lifetime and high reactivity, and the need for a high-level of electronic structure theory to achieve predictive accuracy. The lack of a classical atomistic structural formula makes it exceedingly difficult to model the solvated electron using conventional empirical force fields, which describe the system in terms of interactions between point particles associated with atomic nuclei. Here we overcome this problem using a machine-learning model, that is sufficiently flexible to describe the effect of the excess electron on the structure of the surrounding water, without including the electron in the model explicitly. The resulting potential is not only able to reproduce the stable cavity structure but also recovers the correct localization dynamics that follow the injection of an electron in neat water. The machine learning model achieves the accuracy of the state-of-the-art correlated wave function method it is trained on. It is sufficiently inexpensive to afford a full quantum statistical and dynamical description and allows us to achieve accurate determination of the structure, diffusion mechanisms, and vibrational spectroscopy of the solvated electron.

18 February 2019 in Angewandte Chemie International Edition
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JWJan Wilhelm
Jan Wilhelm
JVJoost VandeVondele
Joost VandeVondele
VRVladimir Rybkin
Vladimir Rybkin
The structure of the hydrated electron is a matter of debate as it evades direct experimental observation owing to the short life time and low concentrations of the species. Herein, the first molecular dynamics simulation of the bulk hydrated electron based on correlated wave‐function theory provides conclusive evidence in favor of a persistent tetrahedral cavity made up by four water molecules, and against the existence of stable non‐cavity structures. Such a cavity is formed within less than a picosecond after the addition of an excess electron to neat liquid water, with less regular cavities appearing as intermediates. The cavities are bound together by weak H−H bonds, the number of which correlates well with the number of coordinated water molecules, each type of cavity leaving a distinct spectroscopic signature. Simulations predict regions of negative spin density and a gyration radius that are both in agreement with experimental data.

21 April 2020 in The Journal of Physical Chemistry Letters
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JLJinggang Lan
Jinggang Lan
VRVladimir Rybkin
Vladimir Rybkin
MIMarcella Iannuzzi
Marcella Iannuzzi

8 August 2022 in Angewandte Chemie International Edition
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Journal Article
Open access
JLJinggang Lan
Jinggang Lan
VRVladimir Rybkin
Vladimir Rybkin
APAlfredo Pasquarello
Alfredo Pasquarello
The temperature‐dependent properties of the aqueous electron have been extensively studied using mixed quantum‐classical simulations in a wide range of thermodynamic conditions based on one‐electron pseudopotentials. While the cavity model appears to explain most of the physical properties of the aqueous electron, only a non‐cavity model has so far been successful in accounting for the temperature dependence of the absorption spectrum. Here, we present an accurate and efficient description of the aqueous electron under various thermodynamic conditions by combining hybrid functional‐based molecular dynamics, machine learning techniques, and multiple time‐step methods. Our advanced simulations accurately describe the temperature dependence of the absorption maximum in the presence of cavity formation. Specifically, our work reveals that the red shift of the absorption maximum results from an increasing gyration radius with temperature, rather than from global density variations as previously suggested.