Many freshwater systems receive substantial inputs of terrestrial organic matter. Terrestrially derived dissolved organic carbon (t‐DOC) inputs can modify light availability, the spatial distribution of primary production, heat, and oxygen in aquatic systems, as well as inorganic nutrient bioavailability. It is also well‐established that some terrestrial inputs (such as invertebrates and fruits) provide high‐quality food resources for consumers in some systems. In small to moderate‐sized streams, leaf litter inputs average approximately three times greater than the autochthonous production. Conversely, in oligo/mesotrophic lakes algal production is typically five times greater than the available flux of allochthonous basal resources. Terrestrial particulate organic carbon (t‐POC) inputs to lakes and rivers are comprised of 80%–90% biochemically recalcitrant lignocellulose, which is highly resistant to enzymatic breakdown by animal consumers. Further, t‐POC and heterotrophic bacteria lack essential biochemical compounds that are critical for rapid growth and reproduction in aquatic invertebrates and fishes. Several studies have directly shown that these resources have very low food quality for herbivorous zooplankton and benthic invertebrates. Much of the nitrogen assimilated by stream consumers is probably of algal origin, even in systems where there appears to be a significant terrestrial carbon contribution. Amino acid stable isotope analyses for large river food webs indicate that most upper trophic level essential amino acids are derived from algae. Similarly, profiles of essential fatty acids in consumers show a strong dependence on the algal food resources. Primary production to respiration ratios are not a meaningful index to assess consumer allochthony because respiration represents an oxidised carbon flux that cannot be utilised by animal consumers. Rather, the relative importance of allochthonous subsidies for upper trophic level production should be addressed by considering the rates at which terrestrial and autochthonous resources are consumed and the growth efficiency supported by this food. Ultimately, the biochemical composition of a particular basal resource, and not just its quantity or origin, determines how readily this material is incorporated into upper trophic level consumers. Because of its highly favourable biochemical composition and greater availability, we conclude that microalgal production supports most animal production in freshwater ecosystems.

Increasing evidence suggests that autochthonous foods are the principal basis of consumer production in tropical forest streams, despite the predominance of terrestrial detritus inputs. The relative importance of autochthonous and allochthonous energy for the dominant benthic consumers was investigated in 3 tropical headwater streams with different shading conditions in Hong Kong with a combination of assimilation-based analyses: stoichiometry, C and N stable isotopes, and fatty acid (FA) profiling. The snail Brotia hainanensis (Pachychilidae), shrimps Caridina cantonensis (Atyidae) and Macrobrachium hainanense (Palaemonidae), and their potential basal food sources (leaf litter, fine particulate organic matter [FPOM], periphyton, cyanobacteria, and filamentous algae) were collected in Tai Po Kau Forest Stream (shaded 1), Shing Mun Stream (shaded 2), and Pak Ngau Shek Stream (open) during the 2004 dry season (January and February). All samples were analyzed for C:N ratios, δ13C, and δ15N values. Total FAs were extracted from each sample, and concentrations of 35 important FAs were analyzed by gas chromatography-mass spectrometry (GC-MS). C:N ratios of algal foods were markedly lower than those of terrestrial detritus and similar to those of the test animals at all 3 sites, a result that suggested that autochthonous sources were relatively more nutritious than were allochthonous sources. Autochthonous foods were more 13C and 15N enriched than were allochthonous foods at all sites. The algal sources contributed to 29 to 98% of consumer biomass, generally more than was attributed to the terrestrial sources (2-71%). Consumers also showed distinctive FA profiles indicating consumption of autochthonous foods, especially periphytic diatoms and cyanobacteria, as revealed by the elevated concentrations of FA biomarkers such as palmitoleic (16:l[cis-9]) and eicosapentaenoic acids (20:5[all c/s-5, 8, 11, 14, 17]) in the consumers, periphyton, and cyanobacteria. Our results suggest that autochthonous resources are possibly more important than allochthonous foods to secondary production in tropical headwater streams. © 2009 by The North American Benthological Society.link_to_subscribed_fulltex

Dystrophic lakes are widespread in temperate regions and intimately interact with surrounding terrestrial ecosystems in energy and nutrient dynamics, yet the relative importance of autochthonous and allochthonous resources to consumer production in dystrophic lakes remains controversial. We argue that allochthonous organic matter quantitatively dominates over photosynthetic autotrophs in dystrophic lakes, but that autotrophs are higher in diet quality and more important for consumers as they contain essential polyunsaturated fatty acids (PUFA). In a field study, we tested the hypotheses that (1) autochthonous primary production is the main driver for consumer production, despite being limited by light availability and low nutrient supplies, and greater supply of allochthonous carbon, (2) the relative contribution of autotrophs to consumers is directly related to their tissue PUFA concentrations, and (3) methane‐oxidizing bacteria (MOB) provide an energy alternative for consumers.Pelagic and benthic consumer taxa representing different trophic levels were sampled from five dystrophic lakes: isopod Asellus aquaticus, megalopteran Sialis lutaria, dipteran Chaoborus flavicans, and perch Perca fluviatilis. Based on carbon and nitrogen stable isotopes, the relative contributions of autochthonous (biofilms and seston) and allochthonous (coarse particulate and dissolved organic matter) resources and MOB to these taxa were 47–79%, 9–44% and 7–12% respectively. Results from fatty acid (FA) analyses show that the relative ω3‐FA and PUFA concentrations increased with trophic level (Asellus < Sialis and Chaoborus < Perca). Also, eicosapentaenoic‐acid (EPA), ω3‐FA and PUFA concentrations increased with the autochthonous contribution in consumers, i.e., a 47–79% biofilm and/or seston diet resulted in tissue EPA of 4.2–18.4, ω3 FAs of 11.6–37.0 and PUFA of 21.6–61.0 mg/g dry mass. The results indicate that consumers in dystrophic lakes predominantly rely on energy from autotrophs and that their PUFA concentrations are dependent on the relative contribution of these autochthonous resources. The limited energy support from MOB suggests they are not negligible and are potentially an integral part of the food webs. Our findings show that autochthonous resources are the main driver of secondary production even in dystrophic lakes and offer new insights into the functioning of these ecosystems.

Global environmental changes are causing widespread nutrient depletion, declines in the ratio of dissolved inorganic nitrogen (N) to total phosphorus (DIN:TP), and increases in both water temperature and terrestrial colored dissolved organic carbon (DOC) concentration (browning) in high‐latitude northern lakes. Declining lake DIN:TP, warming, and browning alter the nutrient limitation regime and biomass of phytoplankton, but how these stressors together affect the nutritional quality in terms of polyunsaturated fatty acid (PUFA) contents of the pelagic food web components remains unknown. We assessed the fatty acid compositions of seston and zooplankton in 33 lakes across south‐to‐north and boreal‐to‐subarctic gradients in Sweden. Data showed higher lake DIN:TP in the south than in the north, and that boreal lakes were warmer and browner than subarctic lakes. Lake DIN:TP strongly affected the PUFA contents—especially eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA)—in seston, calanoids, and copepods (as a group), but not in cladocerans. The EPA+DHA contents increased by 123% in seston, 197% in calanoids, and 230% in copepods across a lake molar DIN:TP gradient from 0.17 to 14.53, indicating lower seston and copepod nutritional quality in the more N‐limited lakes (those with lower DIN:TP). Water temperature affected EPA+DHA contents of zooplankton, especially cladocerans, but not seston. Cladoceran EPA+DHA contents were reduced by ca. 6% for every 1°C increase in surface water. Also, the EPA, DHA, or EPA+DHA contents of Bosmina, cyclopoids, and copepods increased in lakes with higher DOC concentrations or aromaticity. Our findings indicate that zooplankton food quality for higher consumers will decrease with warming alone (for cladocerans) or in combination with declining lake DIN:TP (for copepods), but impacts of these stressors are moderated by lake browning. Global environmental changes that drive northern lakes toward more N‐limited, warmer, and browner conditions will reduce PUFA availability and nutritional quality of the pelagic food web components.