Yasir Mohamed Riza

Mr. Yasir Mohamed Riza

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 May 2023 in Biomolecules
Verified
Journal Article
Open access
PDF file
Faisal A AlzahraniFaisal A Alzahrani
Faisal A Alzahrani
MKMohammad Imran Khan
Mohammad Imran Khan
NKNader Kameli
Nader Kameli
EAElham Alsahafi
Elham Alsahafi
YRYasir Mohamed Riza
Yasir Mohamed Riza
Plant cells release tiny membranous vesicles called extracellular vesicles (EVs), which are rich in lipids, proteins, nucleic acids, and pharmacologically active compounds. These plant-derived EVs (PDEVs) are safe and easily extractable and have been shown to have therapeutic effects against inflammation, cancer, bacteria, and aging. They have shown promise in preventing or treating colitis, cancer, alcoholic liver disease, and even COVID-19. PDEVs can also be used as natural carriers for small-molecule drugs and nucleic acids through various administration routes such as oral, transdermal, or injection. The unique advantages of PDEVs make them highly competitive in clinical applications and preventive healthcare products in the future. This review covers the latest methods for isolating and characterizing PDEVs, their applications in disease prevention and treatment, and their potential as a new drug carrier, with special attention to their commercial viability and toxicological profile, as the future of nanomedicine therapeutics. This review champions the formation of a new task force specializing in PDEVs to address a global need for rigor and standardization in PDEV research.

23 October 2019 in Journal of Biomolecular Structure and Dynamics
Verified
Journal Article
Closed access
SMSahrif mahmud
Sahrif mahmud
RPRimon parves
Rimon parves
YRYasir Mohamed Riza
Yasir Mohamed Riza
KSKhaled Mahmud Sujon
Khaled Mahmud Sujon
SRSuvendu Ray
Suvendu Ray
NAN. Absar
N. Absar
Snake venom of Naja naja comprises of several types of enzymes, and among them, water-soluble proteolytic enzyme, phospholipase A2 (PLA2), is noteworthy for its numerous adverse effects, such as; cytotoxicity, cardiotoxicity, haemolytic, anti-coagulant, and hypotensive effects, including being highly potent as a neurotoxin. Limited anti-venom therapy (with their lower efficacy) has attracted considerable pharmacological interest to develop potent inhibitors of PLA2. Thus, 34 experimentally proven and diverse synthetic inhibitors of PLA2 were screened primarily on the basis of Glide extra precision docking and MM-GBSA rescoring function. Then, ten potential hits were subjected to induced fit docking, in which top three potential inhibitors were considered, and those were found to interact with Ca2+, disulfide binding site, and phosphatidylcholine activation sites, thereby, possibly disrupting the catalytic activity of Ca2+ as well as the inflammatory functions of PLA2. These compounds showed positive remarks on various physiochemical properties and pharmacologically relevant descriptors. Gap energy and thermodynamic properties were investigated by employing density functional theory for all compounds to understand their chemical reactivity and thermodynamic stability. Molecular dynamics simulation was performed for 100ns in order to evaluate the stability and binding modes of docked complexes, and the energy of binding was calculated through MM-PBSA analysis. On the whole, the proposed compounds could be used for targeted inhibition.


12 April 2024 in Cells
Verified
Journal Article
Open access
PDF file
Faisal A AlzahraniFaisal A Alzahrani
Faisal A Alzahrani
YRYasir Mohamed Riza
Yasir Mohamed Riza
TEThamir M Eid
Thamir M Eid
RAReema Almotairi
Reema Almotairi
LSLea Scherschinski
Lea Scherschinski
SASaif Ahmad
Saif Ahmad
Neurodegenerative diseases, such as Alzheimer’s disease (AD), Parkinson’s disease (PD), amyotrophic lateral sclerosis (ALS), Huntington’s disease (HD), stroke, and aneurysms, are characterized by the abnormal accumulation and aggregation of disease-causing proteins in the brain and spinal cord. Recent research suggests that proteins linked to these conditions can be secreted and transferred among cells using exosomes. The transmission of abnormal protein buildup and the gradual degeneration in the brains of impacted individuals might be supported by these exosomes. Furthermore, it has been reported that neuroprotective functions can also be attributed to exosomes in neurodegenerative diseases. The potential neuroprotective functions may play a role in preventing the formation of aggregates and abnormal accumulation of proteins associated with the disease. The present review summarizes the roles of exosomes in neurodegenerative diseases as well as elucidating their therapeutic potential in AD, PD, ALS, HD, stroke, and aneurysms. By elucidating these two aspects of exosomes, valuable insights into potential therapeutic targets for treating neurodegenerative diseases may be provided.

Verified
Journal Article
Open access
PDF file
YRYasir Mohamed Riza
Yasir Mohamed Riza
Faisal A AlzahraniFaisal A Alzahrani
Faisal A Alzahrani
Spinal cord injury (SCI) is a debilitating neurological condition that leads to severe disabilities, significantly reducing patients’ quality of life and imposing substantial societal and economic burdens. SCI involves a complex pathogenesis, including primary irreversible damage and secondary injury driven by neuroinflammation, apoptosis, and ischemia. Current treatments often provide limited efficacy, underscoring the urgent need for innovative therapeutic strategies. This paper aims to explore the potential use of stem cell (SC) therapy and exosome-based treatments as transformative approaches for managing SCI and mitigating associated disabilities. SCs, such as mesenchymal stem cells (MSCs), neural stem cells (NSCs), and embryonic stem cells (ESCs), demonstrate regenerative capabilities, including self-renewal, differentiation into neurons and glial cells, and modulation of the injury microenvironment. These properties enable SCs to reduce inflammation, inhibit apoptosis, and promote neuronal regeneration in preclinical models. Exosome-based therapies, derived from SCs, offer a novel alternative by addressing challenges like immune rejection and tumorigenicity. Exosomes deliver biomolecules, such as miRNAs, fostering anti-inflammatory, anti-apoptotic, and pro-regenerative effects. They have shown efficacy in improving motor function, reducing glial scarring, and enhancing axonal regrowth in SCI models. The objective of this paper is to provide a comprehensive review of SC therapy and exosome-based approaches, emphasizing their potential to revolutionize SCI management while addressing ethical concerns, immune rejection, and the need for large-scale clinical trials. These therapies hold promise for improving recovery outcomes and alleviating the profound disabilities associated with SCI.

30 November 2020 in Proceedings
Verified
Conference Paper
Open access
PDF file
RPRimon parves
Rimon parves
SMSahrif mahmud
Sahrif mahmud
YRYasir Mohamed Riza
Yasir Mohamed Riza
KSKhaled Mahmud Sujon
Khaled Mahmud Sujon
Mohammad Abu Raihan UddinMohammad Abu Raihan Uddin
Mohammad Abu Raihan Uddin
NANurul Absar
Nurul Absar
Inhibition of tumor necrosis factor-alpha (TNF-α) has become a feasible target for alleviating inflammation-mediated diseases. Currently, techniques developed, such as anti-TNF antibody therapies, prove not to be nearly as beneficial enough to effectively treat inflammation-mediated syndromes because of the increased risk for severe infections and malignancies. Our study has undertaken the attempt of identifying small molecules to inhibit TNF-α. This study manually selected 37 plant-derived compounds based on IC50 value from various literature, which showed inhibitory activity against TNF-α. By employing an in silico pipeline, we have aimed to explore the binding modes, to discover the most possible mechanism of inhibition, as well as, for a deeper understanding of structural changes, which is necessary for rationalization of the targeted inhibition by our proposed bioactive compounds. Therefore, this study has identified two potential compounds through advanced induced fit docking and simulation study. The stability of protein-ligand complex and structural changes was studied by performing 100 ns molecular dynamics simulation with its binding energy estimated through MM-PBSA analysis.