Timothy R Keiffer

Dr. Timothy R Keiffer

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Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 February 2006 in Biochemistry
Verified
Journal Article
Closed access
SSSamantha S Strickler
Samantha S Strickler
AGAlexey V Gribenko
Alexey V Gribenko
AGAlexander V Gribenko
Alexander V Gribenko
TKTimothy R Keiffer
Timothy R Keiffer
JTJessica Tomlinson
Jessica Tomlinson
GMGeorge I Makhatadze
George I Makhatadze

17 May 2016 in Proceedings of the National Academy of Sciences
Verified
Journal Article
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SDStephen DiGiuseppe
Stephen DiGiuseppe
WLWioleta Luszczek
Wioleta Luszczek
TKTimothy R Keiffer
Timothy R Keiffer
MBMalgorzata Bienkowska-Haba
Malgorzata Bienkowska-Haba
LGLucile G. M. Guion
Lucile G. M. Guion
MSMartin Sapp
Martin Sapp
Significance: Following egress from the endocytic compartment, nonenveloped DNA viruses have a distinct cytoplasmic phase whereupon the viral genome is transported into the nucleus of infected cells via nuclear pores. In contrast, the human papillomavirus (HPV) waits for nuclear envelope breakdown during mitosis to gain access to the nucleus. Here we provide evidence that the HPV genome resides continuously in a transport vesicle until mitosis is completed. This suggests that membrane-bound vesicles can temporally exist in the nucleus. Because vesicles are not normally detected in the nucleus, this also points to the existence of an unrecognized cell pathway for the disposal of nuclear vesicles.

15 October 2015 in Journal of Virology
Verified
Journal Article
Open access
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SDStephen DiGiuseppe
Stephen DiGiuseppe
TKTimothy R Keiffer
Timothy R Keiffer
MBMalgorzata Bienkowska-Haba
Malgorzata Bienkowska-Haba
WLWioleta Luszczek
Wioleta Luszczek
LGLucile G. M. Guion
Lucile G. M. Guion
MSMartin Sapp
Martin Sapp
The human papillomavirus (HPV) capsid is composed of the major capsid protein L1 and the minor capsid protein L2. During entry, the HPV capsid undergoes numerous conformational changes that result in endosomal uptake and subsequent trafficking of the L2 protein in complex with the viral DNA to the trans -Golgi network. To facilitate this transport, the L2 protein harbors a number of putative motifs that, if capable of direct interaction, would interact with cytosolic host cell factors. These data imply that a portion of L2 becomes cytosolic during infection. Using a low concentration of digitonin to selectively permeabilize the plasma membrane of infected cells, we mapped the topography of the L2 protein during infection. We observed that epitopes within amino acid residues 64 to 81 and 163 to 170 and a C-terminal tag of HPV16 L2 are exposed on the cytosolic side of intracellular membranes, whereas an epitope within residues 20 to 38, which are upstream of a putative transmembrane region, is luminal. Corroborating these findings, we also found that L2 protein is sensitive to trypsin digestion during infection. These data demonstrate that the majority of the L2 protein becomes accessible on the cytosolic side of intracellular membranes in order to interact with cytosolic factors to facilitate vesicular trafficking. IMPORTANCE In order to complete infectious entry, nonenveloped viruses have to pass cellular membranes. This is often achieved through the viral capsid protein associating with or integrating into intracellular membrane. Here, we determine the topography of HPV L2 protein in the endocytic vesicular compartment, suggesting that L2 becomes a transmembrane protein with a short luminal portion and with the majority facing the cytosolic side for interaction with host cell transport factors.

1 March 2018 in PLOS Pathogens
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Journal Article
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MBMalgorzata Bienkowska-Haba
Malgorzata Bienkowska-Haba
WLWioleta Luszczek
Wioleta Luszczek
JMJulia E Myers
Julia E Myers
TKTimothy R Keiffer
Timothy R Keiffer
SDStephen DiGiuseppe
Stephen DiGiuseppe
MSMartin Sapp
Martin Sapp
Herein, we describe a novel infection model that achieves highly efficient infection of primary keratinocytes with human papillomavirus type 16 (HPV16). This cell culture model does not depend on immortalization and is amenable to extensive genetic analyses. In monolayer cell culture, the early but not late promoter was active and yielded a spliced viral transcript pattern similar to HPV16-immortalized keratinocytes. However, relative levels of the E8^E2 transcript increased over time post infection suggesting the expression of this viral repressor is regulated independently of other early proteins and that it may be important for the shift from the establishment to the maintenance phase of the viral life cycle. Both the early and the late promoter were strongly activated when infected cells were subjected to differentiation by growth in methylcellulose. When grown as organotypic raft cultures, HPV16-infected cells expressed late E1^E4 and L1 proteins and replication foci were detected, suggesting that they supported the completion of the viral life cycle. As a proof of principle that the infection system may be used for genetic dissection of viral factors, we analyzed E1, E6 and E7 translation termination linker mutant virus for establishment of infection and genome maintenance. E1 but not E6 and E7 was essential to establish infection. Furthermore, E6 but not E7 was required for episomal genome maintenance. Primary keratinocytes infected with wild type HPV16 immortalized, whereas keratinocytes infected with E6 and E7 knockout virus began to senesce 25 to 35 days post infection. The novel infection model provides a powerful genetic tool to study the role of viral proteins throughout the viral life cycle but especially for immediate early events and enables us to compare low- and high-risk HPV types in the context of infection. Current cell culture models for the study of the human papillomavirus (HPV) life cycle depend on immortalized keratinocytes harboring episomal HPV genomes. However, the requirement for immortalization restricts the study to only a few HPV types and does not allow investigating immediate early events of the viral life cycle. Despite many efforts, efficient infection of primary keratinocytes has not been achieved until now. Using pre-binding of virus to extracellular matrix deposited by keratinocytes, we now achieve very efficient infection of primary keratinocytes. The infection model allows studying the complete viral lifecycle. It could be extended to HPV types that do not immortalize keratinocytes and allows an extensive genetic screen of the contributions of viral factors throughout the viral lifecycle. It should aid the investigations of processes leading to HPV-induced immortalization.

1 March 2014 in Journal of Biological Chemistry
Verified
Journal Article
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TKTimothy R Keiffer
Timothy R Keiffer
JBJudith S. Bond
Judith S. Bond
Meprins have been implicated in the pathogenesis of several inflammatory diseases, including inflammatory bowel disease, in which the cytokine IL-6 is a prominent effector molecule. Because IL-6 levels are elevated markedly in meprin α and α/β knockout mice in an experimental model of inflammatory bowel disease, the interaction between meprins and IL-6 was studied. The results demonstrate that rodent and human meprin A and B cleave IL-6 to a smaller product and, subsequently, are capable of extensive degradation of the cytokine. Analysis of the limited degradation product formed by meprin A indicated that three to five amino acids are removed from the C terminus of the cytokine. Meprin A and meprin B cleaved IL-6 with micromolar affinities (Km of 4.7 and 12.0 μm, respectively) and with high efficiencies (kcat/Km of 0.2 and 2.5 (m−1/s−1) × 106, respectively). These efficiency constants are among the highest for known meprin substrates. Madin-Darby canine kidney cells transiently transfected with meprin α or meprin β constructs also cleave exogenous IL-6. Both human and murine IL-6 cleaved by meprin A or B are inactivated, as demonstrated by their decreased capability to stimulate proliferation of B9 cells. These results are consistent with the proposition that one function of meprin metalloproteases is to modulate inflammation by inactivating IL-6.

17 November 2016 in Cellular Microbiology
Verified
Journal Article
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MBMalgorzata Bienkowska-Haba
Malgorzata Bienkowska-Haba
WLWioleta Luszczek
Wioleta Luszczek
TKTimothy R Keiffer
Timothy R Keiffer
LGLucile G.M. Guion
Lucile G.M. Guion
SDStephen DiGiuseppe
Stephen DiGiuseppe
MSMartin Sapp
Martin Sapp
Human papillomaviruses (HPVs) target promyelocytic leukemia (PML) nuclear bodies (NBs) during infectious entry and PML protein is important for efficient transcription of incoming viral genome. However, the transcriptional down regulation was shown to be promoter‐independent in that heterologous promoters delivered by papillomavirus particles were also affected. To further investigate the role of PML protein in HPV entry, we used small hairpin RNA to knockdown PML protein in HaCaT keratinocytes. Confirming previous findings, PML knockdown in HaCaT cells reduced HPV16 transcript levels significantly following infectious entry without impairing binding and trafficking. However, when we quantified steady‐state levels of pseudogenomes in interphase cells, we found strongly reduced genome levels compared with parental HaCaT cells. Because nuclear delivery was comparable in both cell lines, we conclude that viral pseudogenome must be removed after successful nuclear delivery. Transcriptome analysis by gene array revealed that PML knockdown in clonal HaCaT cells was associated with a constitutive interferon response. Abrogation of JAK1/2 signaling prevented genome loss, however, did not restore viral transcription. In contrast, knockdown of PML protein in HeLa cells did not affect HPV genome delivery and transcription. HeLa cells are transformed by HPV18 oncogenes E6 and E7, which have been shown to interfere with the JAK/Stat signaling pathway. Our data imply that PML NBs protect incoming HPV genomes. Furthermore, they provide evidence that PML NBs are key regulators of the innate immune response in keratinocytes. IMPORTANCE Promyelocytic leukemia nuclear bodies (PML NBs) are important for antiviral defense. Many DNA viruses target these subnuclear structures and reorganize them. Reorganization of PML NBs by viral proteins is important for establishment of infection. In contrast, HPVs require the presence of PML protein for efficient transcription of incoming viral genome. Our finding that PML protein prevents the loss of HPV genome following infection implies that the host cell may be able to recognize chromatinized HPV genome or the associated capsid proteins. A constitutively active interferon response in absence of PML protein suggests that PML NBs are key regulators of the innate immune response in keratinocytes.