Natalia Rudenko

Dr. Natalia Rudenko

Pushchino Branch, Shemyakin–Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 6 Prospekt Nauki, Pushchino, Moscow Region, 142290, Russia, fibkh@bibch.ru
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Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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16 November 2021 in Sensors
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Journal Article
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NRNatalia Rudenko
Natalia Rudenko
KFKsenia Fursova
Ksenia Fursova
ASA. Shepelyakovskaya
A. Shepelyakovskaya
AKAnna Karatovskaya
Anna Karatovskaya
FBFedor Brovko
Fedor Brovko
The recognition of biomolecules is crucial in key areas such as the timely diagnosis of somatic and infectious diseases, food quality control, and environmental monitoring. This determines the need to develop highly sensitive display devices based on the achievements of modern science and technology, characterized by high selectivity, high speed, low cost, availability, and small size. Such requirements are met by biosensor systems—devices for reagent-free analysis of compounds that consist of a biologically sensitive element (receptor), a transducer, and a working solution. The diversity of biological material and methods for its immobilization on the surface or in the volume of the transducer and the use of nanotechnologies have led to the appearance of an avalanche-like number of different biosensors, which, depending on the type of biologically sensitive element, can be divided into three groups: enzyme, affinity, and cellular/tissue. Affinity biosensors are one of the rapidly developing areas in immunoassay, where the key point is to register the formation of an antigen–antibody complex. This review analyzes the latest work by Russian researchers concerning the production of molecules used in various immunoassay formats as well as new fundamental scientific data obtained as a result of their use.

19 December 2020 in Toxins
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NRNatalia Rudenko
Natalia Rudenko
ANAlexey Nagel
Alexey Nagel
AZAnna Zamyatina
Anna Zamyatina
AKAnna Karatovskaya
Anna Karatovskaya
VSVadim Salyamov
Vadim Salyamov
ASAlexander Solonin
Alexander Solonin
Bacillus cereus is the fourth most common cause of foodborne illnesses that produces a variety of pore-forming proteins as the main pathogenic factors. B. cereus hemolysin II (HlyII), belonging to pore-forming β-barrel toxins, has a C-terminal extension of 94 amino acid residues designated as HlyIICTD. An analysis of a panel of monoclonal antibodies to the recombinant HlyIICTD protein revealed the ability of the antibody HlyIIC-20 to inhibit HlyII hemolysis. A conformational epitope recognized by HlyIIC-20 was found. by the method of peptide phage display and found that it is localized in the N-terminal part of HlyIICTD. The HlyIIC-20 interacted with a monomeric form of HlyII, thus suppressing maturation of the HlyII toxin. Protection efficiencies of various B. cereus strains against HlyII were different and depended on the epitope amino acid composition, as well as, insignificantly, on downstream amino acids. Substitution of L324P and P324L in the hemolysins ATCC14579T and B771, respectively, determined the role of leucine localized to the epitope in suppressing the hemolysis by the antibody. Pre-incubation of HlyIIC-20 with HlyII prevented the death of mice up to an equimolar ratio. A strategy of detecting and neutralizing the toxic activity of HlyII could provide a tool for monitoring and reducing B. cereus pathogenicity.

26 October 2022 in Microbiology Spectrum
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NRNatalia Rudenko
Natalia Rudenko
AKAnna Karatovskaya
Anna Karatovskaya
AZAnna Zamyatina
Anna Zamyatina
ASAnna Shepelyakovskaya
Anna Shepelyakovskaya
SSSvetlana Semushina
Svetlana Semushina
YKYuriy Knirel
Yuriy Knirel
Immunization by glycoconjugates withA. baumanniitype K9 CPS fragments induced a high level of antibodies (predominantly IgG) in sera, which reacted specifically with the CPS ofA. baumanniitype K9, as well as a long immunological memory. The sera of immunized animals efficiently opsonizedA. baumanniitype K9.

14 February 2023 in Microbiology Spectrum
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Journal Article
Open access
AKAnna Karatovskaya
Anna Karatovskaya
NRNatalia Rudenko
Natalia Rudenko
AZAnna Zamyatina
Anna Zamyatina
AZAnton Zvonarev
Anton Zvonarev
VOVladimir Oleinikov
Vladimir Oleinikov
FBFedor Brovko
Fedor Brovko
MAbs detected A. baumannii in infected lung tissue, effectively opsonized bacteria, and protected model animals from infection.

15 January 2022 in International Journal of Biological Macromolecules
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Journal Article
Open access
NRNatalia Rudenko
Natalia Rudenko
ASAlexander Siunov
Alexander Siunov
AZAnna Zamyatina
Anna Zamyatina
BMBogdan Melnik
Bogdan Melnik
ANAlexey Nagel
Alexey Nagel
ASAlexander Solonin
Alexander Solonin
Bacillus cereus hemolysin II, a pore-forming β-barrel toxin (HlyII), has a C-terminal extension of 94 amino acid residues, designated as the C-terminal domain of HlyII (HlyIICTD). HlyIICTD is capable of forming oligomers in aqueous solutions. Oligomerization of HlyIICTD significantly increased in the presence of erythrocytes and liposomes. Its affinity for erythrocytes of various origins differed insignificantly but was noticeably higher for T-cells. HlyIICTD destroyed THP-1 monocytes and J774 macrophages, acted most effectively on Jurkat T-lymphocytes and had virtually no impact on B-cell lines. HlyIICTD was able to form ion-conducting channels on an artificial bilayer membrane.

19 April 2023 in Molecules
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ANAlexey Nagel
Alexey Nagel
NRNatalia Rudenko
Natalia Rudenko
PLPolina N. Luchkina
Polina N. Luchkina
AKAnna Karatovskaya
Anna Karatovskaya
AZAnna Zamyatina
Anna Zamyatina
ASAlexander Solonin
Alexander Solonin
Hemolysin II (HlyII) is one of the virulence factors of the opportunistic bacterium Bacillus cereus belonging to the group of β-pore-forming toxins. This work created a genetic construct encoding a large C-terminal fragment of the toxin (HlyIILCTD, M225–I412 according to the numbering of amino acid residues in HlyII). A soluble form of HlyIILCTD was obtained using the SlyD chaperone protein. HlyIILCTD was first shown to be capable of agglutinating rabbit erythrocytes. Monoclonal antibodies against HlyIILCTD were obtained by hybridoma technology. We also proposed a mode of rabbit erythrocyte agglutination by HlyIILCTD and selected three anti-HlyIILCTD monoclonal antibodies that inhibited the agglutination.