Shuntaro Takahashi

Dr. Shuntaro Takahashi

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Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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31 December 2020 in Proceedings of the National Academy of Sciences
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Journal Article
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SLSushil Lathwal
Sushil Lathwal
SYSaigopalakrishna S. Yerneni
Saigopalakrishna S. Yerneni
SBSusanne Boye
Susanne Boye
UMUpenyu Muza
Upenyu Muza
STShuntaro Takahashi
Shuntaro Takahashi
Krzysztof MatyjaszewskiKrzysztof Matyjaszewski
Krzysztof Matyjaszewski
Exosomes are emerging as ideal drug delivery vehicles due to their biological origin and ability to transfer cargo between cells. However, rapid clearance of exogenous exosomes from the circulation as well as aggregation of exosomes and shedding of surface proteins during storage limit their clinical translation. Here, we demonstrate highly controlled and reversible functionalization of exosome surfaces with well-defined polymers that modulate the exosome’s physiochemical and pharmacokinetic properties. Using cholesterol-modified DNA tethers and complementary DNA block copolymers, exosome surfaces were engineered with different biocompatible polymers. Additionally, polymers were directly grafted from the exosome surface using biocompatible photo-mediated atom transfer radical polymerization (ATRP). These exosome polymer hybrids (EPHs) exhibited enhanced stability under various storage conditions and in the presence of proteolytic enzymes. Tuning of the polymer length and surface loading allowed precise control over exosome surface interactions, cellular uptake, and preserved bioactivity. EPHs show fourfold higher blood circulation time without altering tissue distribution profiles. Our results highlight the potential of precise nanoengineering of exosomes toward developing advanced drug and therapeutic delivery systems using modern ATRP methods.

13 October 2020 in Chemical Society Reviews
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STShuntaro Takahashi
Shuntaro Takahashi
NSNaoki Sugimoto
Naoki Sugimoto
This review provides the biophysicochemical background and recent advances in stability prediction of canonical and non-canonical structures of nucleic acids in various molecular environments and cells.

23 September 2021 in Journal of the American Chemical Society
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Journal Article
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STShuntaro Takahashi
Shuntaro Takahashi
AKAnita Kotar
Anita Kotar
HTHisae Tateishi-Karimata
Hisae Tateishi-Karimata
Sudipta BhowmikSudipta Bhowmik
Sudipta Bhowmik
ZWZi-Fu Wang
Zi-Fu Wang
NSNaoki Sugimoto
Naoki Sugimoto

24 March 2022 in Journal of the American Chemical Society
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Journal Article
Open access
KMKane T. McQuaid
Kane T. McQuaid
STShuntaro Takahashi
Shuntaro Takahashi
LBLena Baumgaertner
Lena Baumgaertner
DCDavid J. Cardin
David J. Cardin
NPNeil G. Paterson
Neil G. Paterson
CCChristine Cardin
Christine Cardin
The DNA G-quadruplex is known for forming a range of topologies and for the observed lability of the assembly, consistent with its transient formation in live cells. The stabilization of a particular topology by a small molecule is of great importance for therapeutic applications. Here, we show that the ruthenium complex Λ-[Ru(phen)2(qdppz)]2+ displays enantiospecific G-quadruplex binding. It crystallized in 1:1 stoichiometry with a modified human telomeric G-quadruplex sequence, GGGTTAGGGTTAGGGTTTGGG (htel21T18), in an antiparallel chair topology, the first structurally characterized example of ligand binding to this topology. The lambda complex is bound in an intercalation cavity created by a terminal G-quartet and the central narrow lateral loop formed by T10–T11–A12. The two remaining wide lateral loops are linked through a third K+ ion at the other end of the G-quartet stack, which also coordinates three thymine residues. In a comparative ligand-binding study, we showed, using a Klenow fragment assay, that this complex is the strongest observed inhibitor of replication, both using the native human telomeric sequence and the modified sequence used in this work.

31 January 2023 in Nucleic Acids Research
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Journal Article
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SGSaptarshi Ghosh
Saptarshi Ghosh
STShuntaro Takahashi
Shuntaro Takahashi
DBDipanwita Banerjee
Dipanwita Banerjee
TOTatsuya Ohyama
Tatsuya Ohyama
Tamaki EndohTamaki Endoh
Tamaki Endoh
NSNaoki Sugimoto
Naoki Sugimoto
RNA performs various spatiotemporal functions in living cells. As the solution environments significantly affect the stability of RNA duplexes, a stability prediction of the RNA duplexes in diverse crowded conditions is required to understand and modulate gene expression in heterogeneously crowded intracellular conditions. Herein, we determined the nearest-neighbor (NN) parameters for RNA duplex formation when subjected to crowding conditions with an ionic concentration relevant to that found in cells. Determination of the individual contributions of excluded volume effect and water activity to each of the NN parameters in crowded environments enabled prediction of the thermodynamic parameters and their melting temperatures for plenty of tested RNA duplex formation in vitro and in cell with significant accuracy. The parameters reported herein will help predicting RNA duplex stability in different crowded environments, which will lead to an improved understanding of the stability-function relationship for RNAs in various cellular organelles with different molecular environments.

11 June 2009 in Journal of the American Chemical Society
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Journal Article
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STShuntaro Takahashi
Shuntaro Takahashi
MIMasaaki Iida
Masaaki Iida
HFHiroyuki Furusawa
Hiroyuki Furusawa
YSYoshihiro Shimizu
Yoshihiro Shimizu
TUTakuya Ueda
Takuya Ueda
YOYoshio Okahata
Yoshio Okahata